Package: plgem

Version: 1.12.0

Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check plgem_1.12.0.tar.gz

StartedAt: 2008-10-16 08:49:40 -0700 (Thu, 16 Oct 2008)

EndedAt: 2008-10-16 08:55:41 -0700 (Thu, 16 Oct 2008)

EllapsedTime: 361.1 seconds

RetCode: 0

Status: OK

CheckDir: plgem.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/plgem.Rcheck'
* using R version 2.7.2 (2008-08-25)
* using session charset: ISO8859-1
* checking for file 'plgem/DESCRIPTION' ... OK
* this is package 'plgem' version '1.12.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'plgem' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating plgem-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating plgem-manual.tex ... OK
* checking plgem-manual.tex using pdflatex ... OK

* Installing *source* package 'plgem' ...
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'plgem'
     Formats: text html latex example 
  LPSeset                           text    html    latex   example
  plgem.deg                         text    html    latex   example
  plgem.fit                         text    html    latex   example
  plgem.obsStn                      text    html    latex   example
  plgem.pValue                      text    html    latex   example
  plgem.write.summary               text    html    latex   example
  run.plgem                         text    html    latex   example
** building package indices ...
* DONE (plgem)