GGtools 2.0.2
Vince Carey
| Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/GGtools | | Last Changed Rev: 31794 / Revision: 34573 | | Last Changed Date: 2008-05-19 15:09:13 -0700 (Mon, 19 May 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | ERROR | skipped | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | ERROR | skipped | skipped |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/GGtools.Rcheck'
* using R version 2.7.2 (2008-08-25)
* using session charset: ISO8859-1
* checking for file 'GGtools/DESCRIPTION' ... OK
* this is package 'GGtools' version '2.0.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GGtools' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating GGtools-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating GGtools-manual.tex ... OK
* checking GGtools-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/GGtools.Rcheck
---------- Making package GGtools ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making minfra.d from minfra.cc
g++ -Ie:/biocbld/bbs-2.2-bioc/R/include -O2 -Wall -c minfra.cc -o minfra.o
minfra.cc: In function 'matrix operator/(matrix&, matrix&)':
minfra.cc:459: warning: unused variable 'a2c'
minfra.cc: In function 'matrix delete_col(matrix, int)':
minfra.cc:545: warning: unused variable 'ncop'
minfra.cc:545: warning: unused variable 'nresel'
minfra.cc:545: warning: unused variable 'skip'
minfra.cc:546: warning: unused variable 'resbase'
minfra.cc:546: warning: unused variable 'Xbase'
minfra.cc: In function 'int split(matrix&, matrix&, matrix*)':
minfra.cc:1210: warning: unused variable 'j'
minfra.cc: In function 'matrix* split(matrix&, matrix&)':
minfra.cc:1245: warning: unused variable 'j'
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include -i GGtools_res.rc -o GGtools_res.o
g++ -shared -s -o GGtools.dll GGtools.def minfra.o GGtools_res.o -Le:/biocbld/bbs-2.2-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package GGtools for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: GGBase
Loading required package: GSEABase
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: annotate
Loading required package: xtable
Loading required package: snpMatrix
Loading required package: survival
Loading required package: splines
Loading required package: hgfocus.db
Loading required package: geneplotter
Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: mgu74av2.db
Loading required package: RColorBrewer
Loading required package: Biostrings
Creating a new generic function for "plot" in "GGtools"
installing man source files
installing indices
Loading required package: methods
not zipping data
installing help
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \seealso
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \seealso
>>> Building/Updating help pages for package 'GGtools'
Formats: text html latex example chm
GGfitter-class text html latex example chm
HM2rac text html latex example chm
HMworkflow text html latex example chm
Strains2rac text html latex example chm
geneLocs text html latex example chm
genoStrings text html latex example chm
gwSnpScreen-methods text html latex example chm
gwSnpScreenResult-class text html latex example chm
make_racExSet text html latex example chm
oGtypeExSet-class text html latex example chm
plot_EvG-methods text html latex example chm
racExSet-class text html latex example chm
smlSet-class text html latex example chm
snpLocNCref-class text html latex example chm
snpMeta-class text html latex example chm
snpScreen text html latex example chm
snps text html latex example chm
topSnps-methods text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\GGtools.Rcheck\00_pkg_src\GGtools\chm\GGtools.chm
Compile time: 0 minutes, 0 seconds
19 Topics
204 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\GGtools.Rcheck\00_pkg_src\GGtools\chm\GGtools.chm, 52,384 bytes
Compression decreased file by 82,360 bytes.
adding MD5 sums
* DONE (GGtools)