rsbml 1.5.1
Michael Lawrence
| Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/rsbml | | Last Changed Rev: 30883 / Revision: 30951 | | Last Changed Date: 2008-04-07 09:57:56 -0700 (Mon, 07 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | ERROR | skipped | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | ERROR | skipped | |
| wellington | Linux (openSUSE 10.3) / i686 | ERROR | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | ERROR | skipped | skipped |
| pelham | Mac OS X Leopard (10.5.1) / i386 | [ ERROR ] | skipped | skipped |
* checking for file 'rsbml/DESCRIPTION' ... OK
* preparing 'rsbml':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'rsbml' ...
checking for pkg-config... /usr/local/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for LIBSBML3... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I/usr/include/libxml2 -DLIBSBML3 -I/usr/local/include -fPIC -g -O2 -march=nocona -Wall -c StringMap.c -o StringMap.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I/usr/include/libxml2 -DLIBSBML3 -I/usr/local/include -fPIC -g -O2 -march=nocona -Wall -c check.c -o check.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I/usr/include/libxml2 -DLIBSBML3 -I/usr/local/include -fPIC -g -O2 -march=nocona -Wall -c doc.c -o doc.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I/usr/include/libxml2 -DLIBSBML3 -I/usr/local/include -fPIC -g -O2 -march=nocona -Wall -c dom.c -o dom.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I/usr/include/libxml2 -DLIBSBML3 -I/usr/local/include -fPIC -g -O2 -march=nocona -Wall -c graph.c -o graph.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I/usr/include/libxml2 -DLIBSBML3 -I/usr/local/include -fPIC -g -O2 -march=nocona -Wall -c init.c -o init.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I/usr/include/libxml2 -DLIBSBML3 -I/usr/local/include -fPIC -g -O2 -march=nocona -Wall -c io.c -o io.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o rsbml.so StringMap.o check.o doc.o dom.o graph.o init.o io.o -L/usr/local/lib -lsbml -lstdc++ -lxml2 -lpthread -lz -lm -F/Library/Frameworks/R.framework/.. -framework R -lintl -liconv -lc -Wl,-framework -Wl,CoreFoundation
** R
** inst
** preparing package for lazy loading
Loading required package: graph
** help
>>> Building/Updating help pages for package 'rsbml'
Formats: text html latex example
AlgebraicRule-class text html latex
AssignmentRule-class text html latex
BoundingBox-class text html latex
CVTerm-class text html latex
Compartment-class text html latex
CompartmentGlyph-class text html latex
CompartmentType-class text html latex
CompartmentVolumeRule-class text html latex
Constraint-class text html latex
CubicBezier-class text html latex
Curve-class text html latex
Delay-class text html latex
Dimensions-class text html latex
Event-class text html latex
EventAssignment-class text html latex
FunctionDefinition-class text html latex
GraphicalObject-class text html latex
InitialAssignment-class text html latex
KineticLaw-class text html latex
Layout-class text html latex
LineSegment-class text html latex
Model-class text html latex
ModelCreator-class text html latex
ModelHistory-class text html latex
ModifierSpeciesReference-class text html latex
Parameter-class text html latex
ParameterRule-class text html latex
Point-class text html latex
RateRule-class text html latex
Reaction-class text html latex
ReactionGlyph-class text html latex
Rule-class text html latex
SBML-class text html latex example
SBMLDocument-class text html latex example
SBase-class text html latex
SimpleSpeciesReference-class text html latex
Species-class text html latex
SpeciesConcentrationRule-class text html latex
SpeciesGlyph-class text html latex
SpeciesReference-class text html latex
SpeciesReferenceGlyph-class text html latex
SpeciesType-class text html latex
StoichiometryMath-class text html latex
TextGlyph-class text html latex
Trigger-class text html latex
Unit-class text html latex
UnitDefinition-class text html latex
read text html latex example
** building package indices ...
* DONE (rsbml)
* creating vignettes ... ERROR
Loading required package: graph
Error: processing vignette 'quick-start.Rnw' failed with diagnostics:
chunk 6 (label=problems)
Error in rsbml_read("non-existent-file.xml", check = FALSE) :
unused argument(s) (check = FALSE)
Execution halted