GraphAlignment 1.0.0
Joern P. Meier
| Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GraphAlignment | | Last Changed Rev: 30219 / Revision: 30951 | | Last Changed Date: 2008-02-26 14:58:58 -0800 (Tue, 26 Feb 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pelham | Mac OS X Leopard (10.5.1) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/GraphAlignment.Rcheck'
* using R version 2.7.0 Under development (unstable) (2008-03-10 r44730)
* using session charset: ISO8859-1
* checking for file 'GraphAlignment/DESCRIPTION' ... OK
* this is package 'GraphAlignment' version '1.0.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GraphAlignment' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating GraphAlignment-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating GraphAlignment-manual.tex ... OK
* checking GraphAlignment-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/GraphAlignment.Rcheck
---------- Making package GraphAlignment ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making GA_alloc.d from GA_alloc.c
making GA_matrix.d from GA_matrix.c
making GA_matrix_R.d from GA_matrix_R.c
making GA_message.d from GA_message.c
making GA_vector.d from GA_vector.c
making GA_vector_R.d from GA_vector_R.c
making GraphAlignment.d from GraphAlignment.c
making lap.d from lap.c
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c GA_alloc.c -o GA_alloc.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c GA_matrix.c -o GA_matrix.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c GA_matrix_R.c -o GA_matrix_R.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c GA_message.c -o GA_message.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c GA_vector.c -o GA_vector.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c GA_vector_R.c -o GA_vector_R.o
GA_vector_R.c: In function 'GA_clamp_mode_from_R':
GA_vector_R.c:139: warning: unused variable 'size'
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c GraphAlignment.c -o GraphAlignment.o
GraphAlignment.c: In function 'GA_encode_directed_graph':
GraphAlignment.c:138: warning: suggest explicit braces to avoid ambiguous 'else'
GraphAlignment.c:159: warning: suggest explicit braces to avoid ambiguous 'else'
GraphAlignment.c: In function 'GA_directed_mode_from_R':
GraphAlignment.c:264: warning: unused variable 'size'
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c lap.c -o lap.o
lap.c: In function 'LAP_lap':
lap.c:65: warning: 'min' may be used uninitialized in this function
lap.c:64: warning: 'last' may be used uninitialized in this function
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include -i GraphAlignment_res.rc -o GraphAlignment_res.o
gcc -std=gnu99 -shared -s -o GraphAlignment.dll GraphAlignment.def GA_alloc.o GA_matrix.o GA_matrix_R.o GA_message.o GA_vector.o GA_vector_R.o GraphAlignment.o lap.o GraphAlignment_res.o -Le:/biocbld/bbs-2.2-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'GraphAlignment'
Formats: text html latex example chm
AlignNetworks text html latex example chm
AlignedPairs text html latex example chm
AnalyzeAlignment text html latex example chm
ComputeLinkParameters text html latex example chm
ComputeM text html latex example chm
ComputeNodeParameters text html latex example chm
ComputeScores text html latex example chm
CreateScoreMatrix text html latex example chm
EncodeDirectedGraph text html latex example chm
GenerateExample text html latex example chm
GetBinNumber text html latex example chm
InitialAlignment text html latex example chm
InvertPermutation text html latex example chm
LinearAssignment text html latex example chm
MatrixToBin text html latex example chm
Permute text html latex example chm
Trace text html latex example chm
VectorToBin text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\GraphAlignment.Rcheck\00_pkg_src\GraphAlignment\chm\GraphAlignment.chm
Compile time: 0 minutes, 0 seconds
19 Topics
75 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\GraphAlignment.Rcheck\00_pkg_src\GraphAlignment\chm\GraphAlignment.chm, 32,305 bytes
Compression decreased file by 26,299 bytes.
adding MD5 sums
* DONE (GraphAlignment)