Package: geneplotter

Version: 1.37.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch geneplotter_1.37.0.tar.gz

StartedAt: 2013-03-24 05:33:06 -0700 (Sun, 24 Mar 2013)

EndedAt: 2013-03-24 05:36:20 -0700 (Sun, 24 Mar 2013)

EllapsedTime: 194.5 seconds

RetCode: 0

Status:  OK

CheckDir: geneplotter.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/geneplotter.Rcheck'
* using R version 3.0.0 beta (2013-03-21 r62346)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'geneplotter/DESCRIPTION' ... OK
* this is package 'geneplotter' version '1.37.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'geneplotter' can be installed ... [15s/16s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [36s/38s] OK
Examples with CPU or elapsed time > 5s
           user system elapsed
Makesense 5.079  0.215   5.643
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'geneplotter' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'byChroms.Rnw' 
   'visualize.Rnw' 
** testing if installed package can be loaded
* DONE (geneplotter)

name	user	system	elapsed
GetColor	0.018	0.003	0.021
Makesense	5.079	0.215	5.643
alongChrom	3.948	0.139	4.155
amplicon.plot	0.023	0.001	0.025
cColor	3.284	0.046	3.391
cPlot	3.330	0.037	3.399
cScale	3.198	0.031	3.291
eset133a	0.193	0.011	0.210
groupedHeatmap	0.794	0.014	0.854
histStack	0.048	0.005	0.059
imageMap	0.157	0.019	0.242
make.chromOrd	0.23	0.02	0.27
multiecdf	0.111	0.008	0.123
openHtmlPage	0.031	0.006	0.037
plotChr	4.163	0.099	4.479
plotExpressionGraph	2.297	0.062	2.430
savepng	0.318	0.133	0.940