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Package 223/658HostnameOS / ArchBUILDCHECKBUILD BIN
flowPeaks 1.1.0
Yongchao Ge
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flowPeaks
Last Changed Rev: 70052 / Revision: 74774
Last Changed Date: 2012-10-01 15:43:56 -0700 (Mon, 01 Oct 2012)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]

Summary

Package: flowPeaks
Version: 1.1.0
Command: rm -rf flowPeaks.buildbin-libdir && mkdir flowPeaks.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh flowPeaks_1.1.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R flowPeaks.buildbin-libdir
StartedAt: 2013-03-25 05:24:47 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 05:25:23 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 35.1 seconds
RetCode: 0
Status:  OK 
PackageFile: flowPeaks_1.1.0.tgz
PackageFileSize: 4.292 MiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=flowPeaks.buildbin-libdir flowPeaks_1.1.0.tar.gz'
>>>>>>> 

* installing *source* package 'flowPeaks' ...
** libs
*** arch - i386
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2 -Wall -fasm-blocks  -c Rpack.cpp -o Rpack.o
Rpack.cpp: In function 'void Rpack_relevel(int*, int*, int*, int*, int*, int*)':
Rpack.cpp:141: warning: comparison between signed and unsigned integer expressions
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2 -Wall -fasm-blocks  -c Rregistrate.cpp -o Rregistrate.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2 -Wall -fasm-blocks  -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2 -Wall -fasm-blocks  -c flowPeaks.cpp -o flowPeaks.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2 -Wall -fasm-blocks  -c func_collect.cpp -o func_collect.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2 -Wall -fasm-blocks  -c func_collect_supp.cpp -o func_collect_supp.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2 -Wall -fasm-blocks  -c gvector_gmatrix.cpp -o gvector_gmatrix.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2 -Wall -fasm-blocks  -c kd_tree.cpp -o kd_tree.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2 -Wall -fasm-blocks  -c kmns.cpp -o kmns.o
g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o flowPeaks.so Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L/usr/local/lib -lgsl -lgslcblas -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/flowPeaks.buildbin-libdir/flowPeaks/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'flowPeaks-guide.Rnw' 
** testing if installed package can be loaded
* DONE (flowPeaks)


>>>>>>> 
>>>>>>> FIXING LINKS FOR flowPeaks.buildbin-libdir/flowPeaks/libs/i386/flowPeaks.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "flowPeaks.buildbin-libdir/flowPeaks/libs/i386/flowPeaks.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "flowPeaks.buildbin-libdir/flowPeaks/libs/i386/flowPeaks.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "flowPeaks.buildbin-libdir/flowPeaks/libs/i386/flowPeaks.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "flowPeaks.buildbin-libdir/flowPeaks/libs/i386/flowPeaks.so"


>>>>>>> 
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=flowPeaks.buildbin-libdir --libs-only flowPeaks_1.1.0.tar.gz'
>>>>>>> 

* installing *source* package 'flowPeaks' ...
** libs
*** arch - x86_64
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2 -Wall -fasm-blocks  -c Rpack.cpp -o Rpack.o
Rpack.cpp: In function 'void Rpack_relevel(int*, int*, int*, int*, int*, int*)':
Rpack.cpp:141: warning: comparison between signed and unsigned integer expressions
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2 -Wall -fasm-blocks  -c Rregistrate.cpp -o Rregistrate.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2 -Wall -fasm-blocks  -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2 -Wall -fasm-blocks  -c flowPeaks.cpp -o flowPeaks.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2 -Wall -fasm-blocks  -c func_collect.cpp -o func_collect.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2 -Wall -fasm-blocks  -c func_collect_supp.cpp -o func_collect_supp.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2 -Wall -fasm-blocks  -c gvector_gmatrix.cpp -o gvector_gmatrix.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2 -Wall -fasm-blocks  -c kd_tree.cpp -o kd_tree.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2 -Wall -fasm-blocks  -c kmns.cpp -o kmns.o
g++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o flowPeaks.so Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L/usr/local/lib -lgsl -lgslcblas -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/flowPeaks.buildbin-libdir/flowPeaks/libs/x86_64
* DONE (flowPeaks)


>>>>>>> 
>>>>>>> FIXING LINKS FOR flowPeaks.buildbin-libdir/flowPeaks/libs/x86_64/flowPeaks.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "flowPeaks.buildbin-libdir/flowPeaks/libs/x86_64/flowPeaks.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "flowPeaks.buildbin-libdir/flowPeaks/libs/x86_64/flowPeaks.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "flowPeaks.buildbin-libdir/flowPeaks/libs/x86_64/flowPeaks.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "flowPeaks.buildbin-libdir/flowPeaks/libs/x86_64/flowPeaks.so"