Package: ddgraph

Version: 1.3.1

Command: rm -rf ddgraph.buildbin-libdir && mkdir ddgraph.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ddgraph_1.3.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R ddgraph.buildbin-libdir

StartedAt: 2013-03-25 05:22:29 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 05:22:51 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 22.2 seconds

RetCode: 0

Status:  OK

PackageFile: ddgraph_1.3.1.tgz

PackageFileSize: 812 KiB

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=ddgraph.buildbin-libdir ddgraph_1.3.1.tar.gz'
>>>>>>> 

* installing *source* package 'ddgraph' ...
** libs
*** arch - i386
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"   -fPIC  -g -O2 -Wall -fasm-blocks  -c mcX2cloop.cpp -o mcX2cloop.o
mcX2cloop.cpp: In function 'SEXPREC* mcX2CLoopC(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
mcX2cloop.cpp:14: warning: label 'Rcpp' defined but not used
g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o ddgraph.so mcX2cloop.o /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/lib/i386/libRcpp.a -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/ddgraph.buildbin-libdir/ddgraph/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'ddgraph.Rnw' 
** testing if installed package can be loaded
* DONE (ddgraph)


>>>>>>> 
>>>>>>> FIXING LINKS FOR ddgraph.buildbin-libdir/ddgraph/libs/i386/ddgraph.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "ddgraph.buildbin-libdir/ddgraph/libs/i386/ddgraph.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "ddgraph.buildbin-libdir/ddgraph/libs/i386/ddgraph.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "ddgraph.buildbin-libdir/ddgraph/libs/i386/ddgraph.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "ddgraph.buildbin-libdir/ddgraph/libs/i386/ddgraph.so"


>>>>>>> 
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=ddgraph.buildbin-libdir --libs-only ddgraph_1.3.1.tar.gz'
>>>>>>> 

* installing *source* package 'ddgraph' ...
** libs
*** arch - x86_64
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"   -fPIC  -g -O2 -Wall -fasm-blocks  -c mcX2cloop.cpp -o mcX2cloop.o
mcX2cloop.cpp: In function 'SEXPREC* mcX2CLoopC(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
mcX2cloop.cpp:14: warning: label 'Rcpp' defined but not used
Error in tools:::file_path_as_absolute(base:::system.file(..., package = "Rcpp")) : 
  file '' does not exist
Calls: <Anonymous> ... RcppLdFlags -> RcppLdPath -> Rcpp.system.file -> <Anonymous>
Execution halted
g++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o ddgraph.so mcX2cloop.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
Error in tools:::file_path_as_absolute(base:::system.file(..., package = "Rcpp")) : 
  file '' does not exist
Calls: <Anonymous> ... RcppLdFlags -> RcppLdPath -> Rcpp.system.file -> <Anonymous>
Execution halted
installing to /Users/biocbuild/bbs-2.12-bioc/meat/ddgraph.buildbin-libdir/ddgraph/libs/x86_64
* DONE (ddgraph)


>>>>>>> 
>>>>>>> FIXING LINKS FOR ddgraph.buildbin-libdir/ddgraph/libs/x86_64/ddgraph.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "ddgraph.buildbin-libdir/ddgraph/libs/x86_64/ddgraph.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "ddgraph.buildbin-libdir/ddgraph/libs/x86_64/ddgraph.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "ddgraph.buildbin-libdir/ddgraph/libs/x86_64/ddgraph.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "ddgraph.buildbin-libdir/ddgraph/libs/x86_64/ddgraph.so"