Package: RmiR

Version: 1.15.0

Command: E:\biocbld\bbs-2.12-bioc\R\bin\R.exe --arch i386 CMD check --no-multiarch --no-vignettes --timings RmiR_1.15.0.tar.gz

StartedAt: 2013-03-25 04:38:01 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 04:40:03 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 121.2 seconds

RetCode: 0

Status:  OK

CheckDir: RmiR.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/RmiR.Rcheck'
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RmiR/DESCRIPTION' ... OK
* this is package 'RmiR' version '1.15.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'RmiR' can be installed ... [9s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [41s] OK
Examples with CPU or elapsed time > 5s
            user system elapsed
RmiR       18.04   0.50   25.88
RmiRtc      5.53   0.03    5.57
plotRmiRtc  5.40   0.04    5.43
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'E:/biocbld/bbs-2.12-bioc/meat/RmiR.Rcheck/00check.log'
for details.

* installing *source* package 'RmiR' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'RmiR.Rnw' 
** testing if installed package can be loaded
* DONE (RmiR)

name	user	system	elapsed
RmiR	18.04	0.50	25.88
RmiRtc	5.53	0.03	5.57
data	0.05	0.00	0.05
plotRmiRtc	5.40	0.04	5.43