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Package 442/658HostnameOS / ArchBUILDCHECKBUILD BIN
OCplus 1.33.0
Alexander Ploner
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/OCplus
Last Changed Rev: 70052 / Revision: 74774
Last Changed Date: 2012-10-01 15:43:56 -0700 (Mon, 01 Oct 2012)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: OCplus
Version: 1.33.0
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings OCplus_1.33.0.tar.gz
StartedAt: 2013-03-25 03:28:16 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 03:29:56 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 100.2 seconds
RetCode: 0
Status:  OK 
CheckDir: OCplus.Rcheck
Warnings: 0

Command output

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/OCplus.Rcheck’
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘OCplus/DESCRIPTION’ ... OK
* this is package ‘OCplus’ version ‘1.33.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OCplus’ can be installed ... [5s/6s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: tstatistics.Rd:38-39: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'plot.FDR.result':
  ‘plot.FDR.result’

S3 methods shown with full name in documentation object 'plot.fdr1d.result':
  ‘plot.fdr1d.result’

S3 methods shown with full name in documentation object 'plot.fdr2d.result':
  ‘plot.fdr2d.result’

S3 methods shown with full name in documentation object 'summary.fdr.result':
  ‘summary.fdr.result’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [37s/38s] OK
Examples with CPU or elapsed time > 5s
             user system elapsed
samplesize 10.892  0.236  11.215
tMixture    5.285  0.120   5.517
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  ‘/home/biocbuild/bbs-2.12-bioc/meat/OCplus.Rcheck/00check.log’
for details.

OCplus.Rcheck/00install.out:

* installing *source* package ‘OCplus’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘OCplus.Rnw’ 
** testing if installed package can be loaded
* DONE (OCplus)

OCplus.Rcheck/OCplus-Ex.timings:

nameusersystemelapsed
EOC2.4320.0202.478
FDR0.0360.0000.036
MAsim.smyth0.7320.0000.731
OCshow3.6800.0443.727
TOC0.5600.0240.583
average.fdr3.0560.0243.112
fdr1d1.1760.0161.192
fdr2d1.5080.0361.544
plot.FDR.result0.5450.0000.542
plot.fdr1d.result1.2200.0081.226
plot.fdr2d.result1.6160.0121.629
samplesize10.892 0.23611.215
smooth1d0.0800.0080.103
summary.fdr.result1.2440.0161.495
tMixture5.2850.1205.517