Package: DAVIDQuery

Version: 1.19.0

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings DAVIDQuery_1.19.0.tar.gz

StartedAt: 2013-01-16 01:55:08 -0800 (Wed, 16 Jan 2013)

EndedAt: 2013-01-16 01:55:46 -0800 (Wed, 16 Jan 2013)

EllapsedTime: 37.6 seconds

RetCode: 0

Status:  OK

CheckDir: DAVIDQuery.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.12-bioc/meat/DAVIDQuery.Rcheck’
* using R Under development (unstable) (2012-12-17 r61365)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DAVIDQuery/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DAVIDQuery’ version ‘1.19.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DAVIDQuery’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File ‘DAVIDQuery/R/zzz.R’:
  .onAttach calls:
    cat("This is DAVIDQuery Version ", DQVersion, " ", DQdate, "\n")

Package startup functions should use ‘packageStartupMessage’ to
  generate messages.
See section ‘Good practice’ in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... NOTE
The following files should probably not be installed:
  ‘DAVIDQuery.lyx’

Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  ‘/loc/home/biocbuild/bbs-2.12-bioc/meat/DAVIDQuery.Rcheck/00check.log’
for details.

* installing *source* package ‘DAVIDQuery’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘DAVIDQuery.Rnw’ using ‘latin-9’ 
** testing if installed package can be loaded
This is DAVIDQuery Version  1.19.0   2010-06-10 

* DONE (DAVIDQuery)

name	user	system	elapsed
DAVIDQuery	0.136	0.004	3.641
bracketedStrings	0.012	0.000	0.012
convertIDList	0.008	0.000	0.008
findInBrackets	0.008	0.000	0.008
getAffyChipTypes	0.012	0.000	0.010
getAffyProbesetList	0.424	0.012	3.587
getAnnotationChoices	0.008	0.000	0.009
getIdConversionChoices	0.008	0.000	0.008
requestIDConversion	0.008	0.000	0.009
testGene2Gene	0.056	0.000	4.810
uploadIDList	0.016	0.000	0.017