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Package 467/553HostnameOS / ArchBUILDCHECKBUILD BIN
RPA 1.12.0
Leo Lahti
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/RPA
Last Changed Rev: 64678 / Revision: 69725
Last Changed Date: 2012-03-30 15:05:02 -0700 (Fri, 30 Mar 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: RPA
Version: 1.12.0
Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch RPA_1.12.0.tar.gz
StartedAt: 2012-09-24 01:37:29 -0700 (Mon, 24 Sep 2012)
EndedAt: 2012-09-24 01:38:48 -0700 (Mon, 24 Sep 2012)
EllapsedTime: 79.4 seconds
RetCode: 0
Status:  OK 
CheckDir: RPA.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.10-bioc/meat/RPA.Rcheck'
* using R version 2.15.1 (2012-06-22)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'RPA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RPA' version '1.12.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'RPA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'rpa.fit.test.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

RPA.Rcheck/00install.out:

* installing *source* package 'RPA' ...
** R
** inst
** preparing package for lazy loading
     Package   
[1,] "affydata"
     LibPath                                                          
[1,] "/Library/Frameworks/R.framework/Versions/2.15/Resources/library"
     Item       Title                        
[1,] "Dilution" "AffyBatch instance Dilution"
** help
*** installing help indices
** building package indices
** installing vignettes
   'RPA.Rnw' 
** testing if installed package can be loaded
     Package   
[1,] "affydata"
     LibPath                                                          
[1,] "/Library/Frameworks/R.framework/Versions/2.15/Resources/library"
     Item       Title                        
[1,] "Dilution" "AffyBatch instance Dilution"

* DONE (RPA)

RPA.Rcheck/RPA-Ex.timings:

nameusersystemelapsed
RPA-package000
RPA.iteration0.0000.0000.001
RPA.pointestimate000
estimate.affinities000
estimate.hyperparameters000
get.batches000
get.probe.noise.estimates17.615 1.28418.954
hyperparameter.update0.2130.0140.227
online.quantile0.0010.0000.000
plot000
rpa-class0.0020.0010.002
rpa0.0010.0000.000
rpa.fit-class0.0010.0000.001
rpa.fit000
rpa.list-class0.0010.0010.001
rpa.online0.0000.0000.001
rpa.plot0.0000.0010.001
rpa2eset000
s2.update000
summarize.batches000
toydata0.0000.0000.001