Package: GraphAT

Version: 1.28.0

Command: /home/hpages/test-puck5/bbs-2.10-bioc/R/bin/R CMD check --no-vignettes --timings GraphAT_1.28.0.tar.gz

StartedAt: 2012-04-01 01:30:10 -0700 (Sun, 01 Apr 2012)

EndedAt: 2012-04-01 01:30:41 -0700 (Sun, 01 Apr 2012)

EllapsedTime: 30.7 seconds

RetCode: 0

Status:  OK

CheckDir: GraphAT.Rcheck

Warnings: 0

* using log directory '/loc/home/hpages/test-puck5/bbs-2.10-bioc/meat/GraphAT.Rcheck'
* using R version 2.15.0 RC (2012-03-22 r58802)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GraphAT/DESCRIPTION' ... OK
* this is package 'GraphAT' version '1.28.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'GraphAT' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: depthmat.Rd:28: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/loc/home/hpages/test-puck5/bbs-2.10-bioc/meat/GraphAT.Rcheck/00check.log'
for details.

* installing *source* package 'GraphAT' ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (GraphAT)

name	user	system	elapsed
Phenoclusters	1.116	0.272	1.393
causton	0.380	0.016	0.401
cellcycle	0.180	0.040	0.227
clust2Mat	0	0	0
depthmat	0.220	0.040	0.265
getpvalue	0.004	0.000	0.007
giaever	0.392	0.004	0.402
mRNAclusters	0.612	0.268	0.890
makeClustM	0.000	0.000	0.001
mat2UndirG	0.012	0.000	0.018
permPower	0.736	0.008	0.741
perms	0	0	0