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| Package 106/214 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
limma2.10.0Gordon SmythLast Changed Date: 2007-04-24 11:21:48 -0700 Last Changed Rev: 24214 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
| wellington | Linux (SUSE 9.2) | i686 | OK | [ OK ] | ||
| churchill | Solaris 2.9 | sparc | OK | OK | ||
| lemming | Windows Server 2003 (32-bit) | x64 | OK | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
| derby | Mac OS X (10.4.9) | i686 | OK | OK |
| Package: limma |
| Version: 2.10.0 |
| Command: /loc/biocbuild/bbs-2.0-bioc/R/bin/R CMD check limma_2.10.0.tar.gz |
| RetCode: 0 |
| Time: 353.1 seconds |
| Status: OK |
| CheckDir: limma.Rcheck |
| Warnings: 0 |
* checking for working latex ... OK * using log directory '/extra/loc/biocbuild/bbs-2.0-bioc/meat/limma.Rcheck' * using R version 2.5.0 (2007-04-23) * checking for file 'limma/DESCRIPTION' ... OK * this is package 'limma' version '2.10.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'limma' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * creating limma-Ex.R ... OK * checking examples ... OK * checking tests ... make[1]: Entering directory `/extra/loc/biocbuild/bbs-2.0-bioc/meat/limma.Rcheck/tests' Running 'limma-Tests.R' Comparing 'limma-Tests.Rout' to 'limma-Tests.Rout.save' ... OK make[1]: Leaving directory `/extra/loc/biocbuild/bbs-2.0-bioc/meat/limma.Rcheck/tests' OK * checking package vignettes in 'inst/doc' ... OK * creating limma-manual.tex ... OK * checking limma-manual.tex ... OK
limma.Rcheck/00install.out:
* Installing *source* package 'limma' ...
** R
** inst
** preparing package for lazy loading
** help
>>> Building/Updating help pages for package 'limma'
Formats: text html latex example
01Introduction text html latex
02classes text html latex
03reading text html latex
04Background text html latex
05Normalization text html latex
06linearmodels text html latex
07SingleChannel text html latex
08Tests text html latex
09Diagnostics text html latex
10Other text html latex
LargeDataObject text html latex example
PrintLayout text html latex example
TestResults text html latex example
anova-method text html latex
arrayWeights text html latex example
arrayWeightsQuick text html latex example
asMatrixWeights text html latex example
asdataframe text html latex
asmalist text html latex
asmatrix text html latex
auROC text html latex example
avedups text html latex
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blockDiag text html latex example
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cbind text html latex example
changelog text html latex
channel2M text html latex example
classifytests text html latex example
contrasts.fit text html latex example
controlStatus text html latex example
convest text html latex example
decideTests text html latex
dim text html latex example
dimnames text html latex
dnormexp text html latex
dupcor text html latex example
ebayes text html latex example
exprsMA text html latex
exprset2 text html latex
fitfdist text html latex
fitted.MArrayLM text html latex
geneSetTest text html latex example
getSpacing text html latex example
getlayout text html latex example
gls.series text html latex
gridspotrc text html latex
heatdiagram text html latex example
helpMethods text html latex example
imageplot text html latex example
imageplot3by2 text html latex
intraspotCorrelation text html latex example
isfullrank text html latex example
isnumeric text html latex example
kooperberg text html latex example
limmaUsersGuide text html latex example
lm.series text html latex
lmFit text html latex example
lmscFit text html latex example
loessfit text html latex example
m.spot text html latex
ma3x3 text html latex example
makeContrasts text html latex example
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mdplot text html latex
merge text html latex example
mergeScansRG text html latex example
modelMatrix text html latex example
modifyWeights text html latex example
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normalizeMedianAbsValues text html latex example
normalizeRobustSpline text html latex example
normalizeWithinArrays text html latex example
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normalizequantiles text html latex
normexp text html latex
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plotDensities text html latex example
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printHead text html latex
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protectMetachar text html latex example
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read.columns text html latex
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readGPRHeader text html latex
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readSpotTypes text html latex
readTargets text html latex
readgal text html latex example
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residuals.MArrayLM text html latex
rg.genepix text html latex
rg.quantarray text html latex
rg.series.spot text html latex
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splitName text html latex
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targetsA2C text html latex example
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trimWhiteSpace text html latex example
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unwrapdups text html latex example
venn text html latex example
volcanoplot text html latex example
weightedmedian text html latex example
writefit text html latex
zscore text html latex example
** building package indices ...
* DONE (limma)