Package: BufferedMatrix

Version: 1.0.0

Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD build BufferedMatrix

RetCode: 0

Time: 26.1 seconds

Status: OK

PackageFile: BufferedMatrix_1.0.0.tar.gz

* checking for file 'BufferedMatrix/DESCRIPTION' ... OK
* preparing 'BufferedMatrix':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.0-bioc/tmpdir/Rinst960088763


---------- Making package BufferedMatrix ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making RBufferedMatrix.d from RBufferedMatrix.c
making doubleBufferedMatrix.d from doubleBufferedMatrix.c
making doubleBufferedMatrix_C_tests.d from doubleBufferedMatrix_C_tests.c
making init_package.d from init_package.c
gcc   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c RBufferedMatrix.c -o RBufferedMatrix.o
gcc   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c doubleBufferedMatrix.c -o doubleBufferedMatrix.o
doubleBufferedMatrix.c:3323: warning: 'sort_double' defined but not used
gcc   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c doubleBufferedMatrix_C_tests.c -o doubleBufferedMatrix_C_tests.o
doubleBufferedMatrix_C_tests.c: In function `dbm_c_tester':
doubleBufferedMatrix_C_tests.c:26: warning: implicit declaration of function `Rprintf'
gcc   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c init_package.c -o init_package.o
windres -I d:/biocbld/bbs-2.0-bioc/R/include  -i BufferedMatrix_res.rc -o BufferedMatrix_res.o
gcc  -shared -s  -o BufferedMatrix.dll BufferedMatrix.def RBufferedMatrix.o doubleBufferedMatrix.o doubleBufferedMatrix_C_tests.o init_package.o BufferedMatrix_res.o  -Ld:/biocbld/bbs-2.0-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  save image
[1] "buffer.dim"
[1] "is.ColMode"
[1] "is.RowMode"
[1] "RowMode"
[1] "ColMode"
[1] "set.buffer.dim"
[1] "prefix"
[1] "directory"
[1] "filenames"
[1] "duplicate"
[1] "ewApply"
[1] "pow"
[1] "Max"
[1] "Min"
[1] "Sum"
[1] "Var"
[1] "Sd"
[1] "rowMeans"
[1] "rowSums"
[1] "rowVars"
[1] "rowSd"
[1] "rowMax"
[1] "rowMin"
[1] "colMeans"
[1] "colSums"
[1] "colVars"
[1] "colSd"
[1] "colMax"
[1] "colMin"
[1] "colMedians"
[1] "colRanges"
[1] "colApply"
[1] "rowApply"
[1] "subBufferedMatrix"
[1] "rownames"
[1] "colnames"
[1] "colnames<-"
[1] "rownames<-"
[1] "ReadOnlyMode"
[1] "is.ReadOnlyMode"
[1] "memory.usage"
[1] "disk.usage"
[1] "AddColumn"
[1] "BufferedMatrix"
[1] "dim"
[1] "buffer.dim"
[1] "["
[1] "[<-"
[1] "show"
Creating a new generic function for "ncol" in "BufferedMatrix"
[1] "ncol"
Creating a new generic function for "nrow" in "BufferedMatrix"
[1] "nrow"
[1] "is.ColMode"
[1] "is.RowMode"
[1] "RowMode"
[1] "ColMode"
[1] "set.buffer.dim"
[1] "prefix"
[1] "directory"
[1] "filenames"
[1] "duplicate"
[1] "ewApply"
[1] "sqrt"
[1] "exp"
Creating a new generic function for "log" in "BufferedMatrix"
[1] "log"
[1] "pow"
[1] "Max"
[1] "Min"
Creating a new generic function for "mean" in "BufferedMatrix"
[1] "mean"
[1] "Sum"
[1] "Var"
[1] "Sd"
[1] "rowMeans"
[1] "rowSums"
[1] "rowVars"
[1] "rowSd"
[1] "rowMax"
[1] "rowMin"
[1] "colMeans"
[1] "colSums"
[1] "colVars"
[1] "colSd"
[1] "colMax"
[1] "colMin"
[1] "colMedians"
[1] "colRanges"
[1] "colApply"
[1] "rowApply"
Creating a new generic function for "as.matrix" in "BufferedMatrix"
[1] "as.matrix"
[1] "subBufferedMatrix"
[1] "rownames"
[1] "colnames"
[1] "colnames<-"
[1] "rownames<-"
[1] "dimnames"
[1] "dimnames<-"
[1] "ReadOnlyMode"
[1] "is.ReadOnlyMode"
[1] "memory.usage"
[1] "disk.usage"
[1] "AddColumn"
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'BufferedMatrix'
     Formats: text html latex example chm 
  BufferedMatrix-class              text    html    latex           chm
  as.BufferedMatrix                 text    html    latex           chm
  createBufferedMatrix              text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.0-bioc\meat\BufferedMatrix\chm\BufferedMatrix.chm





Compile time: 0 minutes, 0 seconds

4	Topics

101	Local links

0	Internet links

1	Graphic





Created d:\biocbld\bbs-2.0-bioc\meat\BufferedMatrix\chm\BufferedMatrix.chm, 22,961 bytes

Compression decreased file by 28,081 bytes.

  adding MD5 sums

* DONE (BufferedMatrix)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'BufferedMatrix_1.0.0.tar.gz'