Package: arrayMagic

Version: 1.12.0

Command: D:\biocbld\1.9d\R\bin\R.exe CMD build arrayMagic

RetCode: 0

Time: 161.4 seconds

Status: OK

PackageFile: arrayMagic_1.12.0.tar.gz

* checking for file 'arrayMagic/DESCRIPTION' ... OK
* preparing 'arrayMagic':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/1.9d/tmpdir/Rinst578814212


---------- Making package arrayMagic ------------
  adding build stamp to DESCRIPTION
  installing R files
  save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: vsn
Loading required package: limma
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
[1] "arrayData"
[1] "initialize"
[1] "weights<-"
[1] "weights<-"
[1] "intensities<-"
[1] "intensities<-"
[1] "spotAttr<-"
[1] "spotAttr<-"
[1] "hybAttrList<-"
[1] "hybAttrList<-"
[1] "getIntensities"
[1] "getIntensities"
[1] "getWeights"
[1] "getWeights"
[1] "getSpotAttr"
[1] "getSpotAttr"
[1] "getHybAttrList"
[1] "getHybAttrList"
[1] "getHybAttr"
[1] "getHybAttr"
[1] "getHybAttrRed"
[1] "getHybAttrRed"
[1] "getHybAttrGreen"
[1] "getHybAttrGreen"
[1] "["
[1] "as.RGList"
[1] "as.RGList"
[1] "show"
[1] "exprSetRG"
[1] "initialize"
[1] "show"
[1] "as.exprSet"
[1] "as.exprSet"
[1] "as.RGList"
[1] "getIndGreen"
[1] "getIndGreen"
[1] "getExprSetGreen"
[1] "getExprSetGreen"
[1] "getIndRed"
[1] "getIndRed"
[1] "getExprSetRed"
[1] "getExprSetRed"
[1] "getExprSetLogRatio"
[1] "getExprSetLogRatio"
[1] "getExprSetGreenMinusRed"
[1] "getExprSetGreenMinusRed"
[1] "getExprSetRedMinusGreen"
[1] "getExprSetRedMinusGreen"
[1] "phenoDataGreen"
[1] "phenoDataGreen"
[1] "pDataGreen"
[1] "pDataGreen"
[1] "phenoDataRed"
[1] "phenoDataRed"
[1] "pDataRed"
[1] "pDataRed"
[1] "phenoDataSlide"
[1] "phenoDataSlide"
[1] "pDataSlide"
[1] "pDataSlide"
[1] "slideSubset"
[1] "slideSubset"
[1] "["
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'arrayMagic'
     Formats: text html latex example chm 
  arrayData-class                   text    html    latex   example chm
  cbind.arrayData                   text    html    latex   example chm
  cbind.exprSetRG                   text    html    latex   example chm
  colCors                           text    html    latex   example chm
  controlledApply                   text    html    latex   example chm
  controlledSubsetting              text    html    latex   example chm
  detectReplicas                    text    html    latex   example chm
  exprSetRG-class                   text    html    latex   example chm
  fdc                               text    html    latex   example chm
  interweave                        text    html    latex   example chm
  normalise                         text    html    latex   example chm
  plot.imageMatrix                  text    html    latex   example chm
  plotDistributions                 text    html    latex   example chm
  processArrayData                  text    html    latex   example chm
  processArrayDataObject            text    html    latex   example chm
  qualityDiagnostics                text    html    latex   example chm
  qualityParameters                 text    html    latex   example chm
  readIntensities                   text    html    latex   example chm
  readpDataSlides                   text    html    latex   example chm
  removeSpots                       text    html    latex   example chm
  simpleApply                       text    html    latex   example chm
  slideMerge                        text    html    latex   example chm
  spatialLayout                     text    html    latex   example chm
  spotMerge                         text    html    latex   example chm
  visualiseHybridisations           text    html    latex   example chm
  visualiseQualityParameters        text    html    latex   example chm
  write.htmltable                   text    html    latex   example chm
  writeToFile                       text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\1.9d\Rpacks\arrayMagic\chm\arrayMagic.chm





Compile time: 0 minutes, 0 seconds

29	Topics

247	Local links

1	Internet link

1	Graphic





Created d:\biocbld\1.9d\Rpacks\arrayMagic\chm\arrayMagic.chm, 71,631 bytes

Compression decreased file by 99,592 bytes.

  adding MD5 sums

* DONE (arrayMagic)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'arrayMagic_1.12.0.tar.gz'