Package: hexbin

Version: 1.8.0

Command: /loc/biocbuild/1.9d/R/bin/R CMD check hexbin_1.8.0.tar.gz

RetCode: 0

Time: 349.3 seconds

Status: WARNINGS

CheckDir: hexbin.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory '/loc/biocbuild/1.9d/Rpacks/hexbin.Rcheck'
* using R version 2.4.0 (2006-10-03)
* checking for file 'hexbin/DESCRIPTION' ... OK
* this is package 'hexbin' version '1.8.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'hexbin' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... WARNING
Creating a new generic function for "plot" in "colorspace"
Loading required package: methods
Error in paste(x[c("major", "minor")], collapse = ".") : 
	could not find function "getMethods"
Error: .onLoad failed in 'loadNamespace' for 'colorspace'
Execution halted

A namespace must be able to be loaded with just the base namespace loaded:
otherwise if the namespace gets loaded by a saved object, the session will
be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating hexbin-Ex.R ... OK
* checking examples ... OK
* checking tests ...
make[1]: Entering directory `/loc/biocbuild/1.9d/Rpacks/hexbin.Rcheck/tests'
  Running 'hdiffplot.R'
  Comparing 'hdiffplot.Rout' to 'hdiffplot.Rout.save' ...4d3
< Creating a new generic function for "plot" in "colorspace"
143d141
< + plot.new()
 OK
  Running 'hray.R'
  Running 'large.R'
  Running 'viewp-ex.R'
make[1]: Leaving directory `/loc/biocbuild/1.9d/Rpacks/hexbin.Rcheck/tests'
 OK
* checking package vignettes in 'inst/doc' ... OK
* creating hexbin-manual.tex ... OK
* checking hexbin-manual.tex ... OK

WARNING: There was 1 warning, see
  /loc/biocbuild/1.9d/Rpacks/hexbin.Rcheck/00check.log
for details

* Installing *source* package 'hexbin' ...
** libs
gfortran   -fPIC  -g -O2 -Wall -c hbin.f -o hbin.o
gfortran   -fPIC  -g -O2 -Wall -c hcell.f -o hcell.o
gfortran   -fPIC  -g -O2 -Wall -c herode.f -o herode.o
gfortran   -fPIC  -g -O2 -Wall -c hsm.f -o hsm.o
gcc -G -L/usr/local/lib -o hexbin.so hbin.o hcell.o herode.o hsm.o  -lgfortran -lm -lgcc_s 
** R
** data
** inst
** preparing package for lazy loading
Loading required package: grid
Loading required package: lattice
Loading required package: colorspace
Creating a new generic function for "plot" in "colorspace"

Attaching package: 'colorspace'


	The following object(s) are masked from package:grDevices :

	 hcl 

Creating a new generic function for "summary" in "hexbin"
** help
 >>> Building/Updating help pages for package 'hexbin'
     Formats: text html latex example 
  NHANES                            text    html    latex   example
  colramp                           text    html    latex   example
  erode.hexbin                      text    html    latex   example
  getHMedian                        text    html    latex   example
  gplot.hexbin                      text    html    latex   example
  grid.hexagons                     text    html    latex   example
  grid.hexlegend                    text    html    latex   example
  hboxplot                          text    html    latex   example
  hcell2xy                          text    html    latex   example
  hcell2xyInt                       text    html    latex   example
  hdiffplot                         text    html    latex   example
  hexGraphPaper                     text    html    latex   example
  hexList                           text    html    latex   example
  hexMA.loess                       text    html    latex   example
  hexTapply                         text    html    latex   example
  hexVP-class                       text    html    latex   example
  hexVP.abline                      text    html    latex   example
  hexViewport                       text    html    latex   example
  hexbin                            text    html    latex   example
  hexbinplot                        text    html    latex   example
  hexplom                           text    html    latex   example
  hexpolygon                        text    html    latex   example
  hsmooth-methods                   text    html    latex
  inout.hex                         text    html    latex
  list2hexList                      text    html    latex
  old-classes                       text    html    latex
  optShape                          text    html    latex   example
  panel.hexboxplot                  text    html    latex   example
  panel.hexgrid                     text    html    latex   example
  panel.hexloess                    text    html    latex   example
  plotMAhex                         text    html    latex   example
  pushHexport                       text    html    latex
  smooth.hexbin                     text    html    latex   example
** building package indices ...
* DONE (hexbin)