Package: goCluster

Version: 1.6.0

Command: /loc/biocbuild/1.8d/R/bin/R CMD check goCluster_1.6.0.tar.gz

RetCode: 0

Time: 872.4 seconds

Status: OK

CheckDir: goCluster.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/loc/biocbuild/1.8d/Rpacks/goCluster.Rcheck'
* using Version 2.3.1 (2006-06-01)
* checking for file 'goCluster/DESCRIPTION' ... OK
* this is package 'goCluster' version '1.6.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'goCluster' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating goCluster-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating goCluster-manual.tex ... OK
* checking goCluster-manual.tex ... OK

* Installing *source* package 'goCluster' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Creating a new generic function for 'print' in 'goCluster'
** help
 >>> Building/Updating help pages for package 'goCluster'
     Formats: text html latex example 
  benomylsetup                      text    html    latex   example
  checkData                         text    html    latex   example
  checkProtection                   text    html    latex   example
  checkannotationpackage            text    html    latex   example
  clusterAlgorithm-class            text    html    latex
  clusterAlgorithmClara-class       text    html    latex   example
  clusterAlgorithmHclust-class      text    html    latex   example
  clusterAlgorithmKmeans-class      text    html    latex   example
  clusterAlgorithmPam-class         text    html    latex   example
  clusterAnnotation-class           text    html    latex
  clusterAnnotationChromosome-abp-c text    html    latex   example
  clusterAnnotationGO-abp-class     text    html    latex   example
  clusterAnnotationLookup           text    html    latex   example
  clusterData-class                 text    html    latex
  clusterModule-class               text    html    latex
  clusterSignif-class               text    html    latex
  clusterSignifBase-class           text    html    latex   example
  clusterSignifBonferroni-class     text    html    latex   example
  clusterSignifFDR-class            text    html    latex   example
  clusterStatistic-class            text    html    latex
  clusterStatisticHyper-class       text    html    latex
  clusterVisual-class               text    html    latex
  clusterVisualHclust-class         text    html    latex   example
  clusterVisualHeatmap-class        text    html    latex   example
  clusterVisualNone-class           text    html    latex   example
  clusterclara                      text    html    latex   example
  clusterhclust                     text    html    latex   example
  clusterkmeans                     text    html    latex   example
  clusterpam                        text    html    latex   example
  collectTerms                      text    html    latex   example
  config-methods                    text    html    latex   example
  display-methods                   text    html    latex   example
  evalClusterHyper                  text    html    latex   example
  execute-assign-methods            text    html    latex   example
  execute-methods                   text    html    latex   example
  getChildrenClasses                text    html    latex   example
  getGeneColors                     text    html    latex   example
  goCluster-class                   text    html    latex   example
  groupCount                        text    html    latex   example
  mergeResult                       text    html    latex   example
  minimizeSelection                 text    html    latex   example
  plotAxis                          text    html    latex
  prepareAxis                       text    html    latex   example
  prepareCHRannotation              text    html    latex   example
  prepareGOannotation               text    html    latex   example
  prepareHeatmap                    text    html    latex   example
  printData                         text    html    latex   example
  reset-methods                     text    html    latex   example
  selectAnnoStats                   text    html    latex   example
  selectChild                       text    html    latex   example
  selectCore                        text    html    latex   example
  selectDouble                      text    html    latex   example
  selectNumber                      text    html    latex   example
  selectOption                      text    html    latex   example
  selectStats                       text    html    latex   example
  selectStatsBonferroni             text    html    latex   example
  selectTerms                       text    html    latex   example
  setup-assign-methods              text    html    latex   example
  setup-methods                     text    html    latex   example
** building package indices ...
* DONE (goCluster)