RDAVIDWebService

This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see RDAVIDWebService.

An R Package for retrieving data from DAVID into R objects using Web Services API.


Bioconductor version: 3.10

Tools for retrieving data from the Database for Annotation, Visualization and Integrated Discovery (DAVID) using Web Services into R objects. This package offers the main functionalities of DAVID website including: i) user friendly connectivity to upload gene/background list/s, change gene/background position, select current specie/s, select annotations, etc. ii) Reports of the submitted Gene List, Annotation Category Summary, Gene/Term Clusters, Functional Annotation Chart, Functional Annotation Table

Author: Cristobal Fresno and Elmer A. Fernandez

Maintainer: Cristobal Fresno <cfresno at bdmg.com.ar>

Citation (from within R, enter citation("RDAVIDWebService")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RDAVIDWebService")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RDAVIDWebService")
RDAVIDWebService: a versatile R interface to DAVID PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, GraphAndNetwork, Software, Visualization
Version 1.24.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License GPL (>=2)
Depends R (>= 2.14.1), methods, graph, GOstats, ggplot2
Imports Category, GO.db, RBGL, rJava
System Requirements
URL http://www.bdmg.com.ar http://david.abcc.ncifcrf.gov/
See More
Suggests Rgraphviz
Linking To
Enhances
Depends On Me CompGO
Imports Me
Suggests Me FGNet, IntramiRExploreR
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RDAVIDWebService_1.24.0.tar.gz
Windows Binary RDAVIDWebService_1.24.0.zip
Mac OS X 10.11 (El Capitan) RDAVIDWebService_1.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RDAVIDWebService
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RDAVIDWebService
Bioc Package Browser https://code.bioconductor.org/browse/RDAVIDWebService/
Package Short Url https://bioconductor.org/packages/RDAVIDWebService/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive