Last updated on 2026-04-21 12:54:44 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.11.0 | 37.08 | 734.38 | 771.46 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.11.0 | 23.82 | 458.96 | 482.78 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.11.0 | 69.00 | 1107.41 | 1176.41 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.11.0 | 61.00 | 1141.32 | 1202.32 | OK | |
| r-devel-macos-arm64 | 0.11.0 | 8.00 | 110.00 | 118.00 | OK | |
| r-devel-windows-x86_64 | 0.11.0 | 51.00 | 553.00 | 604.00 | OK | |
| r-patched-linux-x86_64 | 0.11.0 | 50.73 | 688.75 | 739.48 | OK | |
| r-release-linux-x86_64 | 0.11.0 | 33.90 | 655.06 | 688.96 | OK | |
| r-release-macos-arm64 | 0.11.0 | 8.00 | 113.00 | 121.00 | OK | |
| r-release-macos-x86_64 | 0.11.0 | 28.00 | 883.00 | 911.00 | OK | |
| r-release-windows-x86_64 | 0.11.0 | 39.00 | 544.00 | 583.00 | OK | |
| r-oldrel-macos-arm64 | 0.11.0 | 8.00 | 107.00 | 115.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.11.0 | 26.00 | 545.00 | 571.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.11.0 | 53.00 | 631.00 | 684.00 | ERROR |
Version: 0.11.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [89s/44s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-23 08:14:28.445544: Isomap START
> test_pipeop_isomap.R: 2026-03-23 08:14:28.445781: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:28.448718: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:28.454427: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 08:14:28.466704: Isomap START
> test_pipeop_isomap.R: 2026-03-23 08:14:28.466827: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:28.469401: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:28.475139: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 08:14:28.481901: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-23 08:14:28.48208: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:28.486462: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:28.501297: embedding
> test_pipeop_isomap.R: 2026-03-23 08:14:28.501677: DONE
> test_pipeop_isomap.R: 2026-03-23 08:14:28.508111: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-23 08:14:28.508253: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:28.554855: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:28.569702: embedding
> test_pipeop_isomap.R: 2026-03-23 08:14:28.570263: DONE
> test_pipeop_isomap.R: 2026-03-23 08:14:28.599514: Isomap START
> test_pipeop_isomap.R: 2026-03-23 08:14:28.599669: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:28.604706: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:28.638057: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 08:14:28.648015: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-23 08:14:28.648238: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:28.656088: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:28.732572: embedding
> test_pipeop_isomap.R: 2026-03-23 08:14:28.733599: DONE
> test_pipeop_isomap.R: 2026-03-23 08:14:28.782767: Isomap START
> test_pipeop_isomap.R: 2026-03-23 08:14:28.782909: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:28.785274: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:28.791339: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 08:14:28.798693: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-23 08:14:28.798837: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:28.803385: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:28.818232: embedding
> test_pipeop_isomap.R: 2026-03-23 08:14:28.818598: DONE
> test_pipeop_isomap.R: 2026-03-23 08:14:28.853303: Isomap START
> test_pipeop_isomap.R: 2026-03-23 08:14:28.853446: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:28.855929: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:28.862323: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 08:14:28.87601: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-23 08:14:28.876214: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:28.881248: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:28.895996: embedding
> test_pipeop_isomap.R: 2026-03-23 08:14:28.896374: DONE
> test_pipeop_isomap.R: 2026-03-23 08:14:28.928906: Isomap START
> test_pipeop_isomap.R: 2026-03-23 08:14:28.929028: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:28.931067: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:28.936888: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 08:14:28.947236: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-23 08:14:28.947393: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:28.951978: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:28.966932: embedding
> test_pipeop_isomap.R: 2026-03-23 08:14:28.967299: DONE
> test_pipeop_isomap.R: 2026-03-23 08:14:28.985915: Isomap START
> test_pipeop_isomap.R: 2026-03-23 08:14:28.986056: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:28.988403: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:28.994435: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 08:14:29.007121: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-23 08:14:29.007337: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:29.011907: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:29.026945: embedding
> test_pipeop_isomap.R: 2026-03-23 08:14:29.027341: DONE
> test_pipeop_isomap.R: 2026-03-23 08:14:29.057147: Isomap START
> test_pipeop_isomap.R: 2026-03-23 08:14:29.057385: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:29.059752: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:29.065931: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 08:14:29.081954: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-23 08:14:29.082164: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:29.087034: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:29.101948: embedding
> test_pipeop_isomap.R: 2026-03-23 08:14:29.102314: DONE
> test_pipeop_isomap.R: 2026-03-23 08:14:29.123791: Isomap START
> test_pipeop_isomap.R: 2026-03-23 08:14:29.12392: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:29.126403: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:29.132599: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 08:14:29.152912: Isomap START
> test_pipeop_isomap.R: 2026-03-23 08:14:29.153068: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:29.155645: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:29.161717: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 08:14:29.167856: Isomap START
> test_pipeop_isomap.R: 2026-03-23 08:14:29.167972: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:29.170495: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:29.176557: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_dictionary.R:7:3', 'test_mlr_graphs_branching.R:26:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_colapply.R:9:3', 'test_pipeop_collapsefactors.R:6:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_info.R:3:1', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3',
'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3',
'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3',
'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3',
'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3',
'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3',
'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3',
'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3',
'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3',
'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3',
'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3',
'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3',
'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1',
'test_pipeop_splines.R:3:1', 'test_pipeop_nmf.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [287s/292s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-04-21 03:10:30.611323: Isomap START
> test_pipeop_isomap.R: 2026-04-21 03:10:30.611873: constructing knn graph
> test_pipeop_isomap.R: 2026-04-21 03:10:30.626127: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-21 03:10:30.649922: Classical Scaling
> test_pipeop_isomap.R: 2026-04-21 03:10:30.740014: Isomap START
> test_pipeop_isomap.R: 2026-04-21 03:10:30.740428: constructing knn graph
> test_pipeop_isomap.R: 2026-04-21 03:10:30.761404: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-21 03:10:30.795471: Classical Scaling
> test_pipeop_isomap.R: 2026-04-21 03:10:30.881474: L-Isomap embed START
> test_pipeop_isomap.R: 2026-04-21 03:10:30.887748: constructing knn graph
> test_pipeop_isomap.R: 2026-04-21 03:10:30.913779: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-21 03:10:31.066392: embedding
> test_pipeop_isomap.R: 2026-04-21 03:10:31.090579: DONE
> test_pipeop_isomap.R: 2026-04-21 03:10:31.134156: L-Isomap embed START
> test_pipeop_isomap.R: 2026-04-21 03:10:31.13453: constructing knn graph
> test_pipeop_isomap.R: 2026-04-21 03:10:31.168806: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-21 03:10:31.232452: embedding
> test_pipeop_isomap.R: 2026-04-21 03:10:31.234612: DONE
> test_pipeop_isomap.R: 2026-04-21 03:10:31.454278: Isomap START
> test_pipeop_isomap.R: 2026-04-21 03:10:31.454737: constructing knn graph
> test_pipeop_isomap.R: 2026-04-21 03:10:31.655589: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-21 03:10:31.911677: Classical Scaling
> test_pipeop_isomap.R: 2026-04-21 03:10:31.990956: L-Isomap embed START
> test_pipeop_isomap.R: 2026-04-21 03:10:31.991483: constructing knn graph
> test_pipeop_isomap.R: 2026-04-21 03:10:32.080788: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-21 03:10:32.419673: embedding
> test_pipeop_isomap.R: 2026-04-21 03:10:32.44552: DONE
> test_pipeop_isomap.R: 2026-04-21 03:10:32.702815: Isomap START
> test_pipeop_isomap.R: 2026-04-21 03:10:32.705859: constructing knn graph
> test_pipeop_isomap.R: 2026-04-21 03:10:32.770275: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-21 03:10:32.7916: Classical Scaling
> test_pipeop_isomap.R: 2026-04-21 03:10:32.814477: L-Isomap embed START
> test_pipeop_isomap.R: 2026-04-21 03:10:32.814965: constructing knn graph
> test_pipeop_isomap.R: 2026-04-21 03:10:32.852036: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-21 03:10:32.942766: embedding
> test_pipeop_isomap.R: 2026-04-21 03:10:32.965259: DONE
> test_pipeop_isomap.R: 2026-04-21 03:10:33.244325: Isomap START
> test_pipeop_isomap.R: 2026-04-21 03:10:33.24478: constructing knn graph
> test_pipeop_isomap.R: 2026-04-21 03:10:33.266093: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-21 03:10:33.298118: Classical Scaling
> test_pipeop_isomap.R: 2026-04-21 03:10:33.431203: L-Isomap embed START
> test_pipeop_isomap.R: 2026-04-21 03:10:33.431635: constructing knn graph
> test_pipeop_isomap.R: 2026-04-21 03:10:33.586845: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-21 03:10:33.686266: embedding
> test_pipeop_isomap.R: 2026-04-21 03:10:33.688857: DONE
> test_pipeop_isomap.R: 2026-04-21 03:10:33.833706: Isomap START
> test_pipeop_isomap.R: 2026-04-21 03:10:33.834887: constructing knn graph
> test_pipeop_isomap.R: 2026-04-21 03:10:33.850657: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-21 03:10:33.932757: Classical Scaling
> test_pipeop_isomap.R: 2026-04-21 03:10:34.045606: L-Isomap embed START
> test_pipeop_isomap.R: 2026-04-21 03:10:34.046045: constructing knn graph
> test_pipeop_isomap.R: 2026-04-21 03:10:34.073359: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-21 03:10:34.152524: embedding
> test_pipeop_isomap.R: 2026-04-21 03:10:34.153965: DONE
> test_pipeop_isomap.R: 2026-04-21 03:10:34.354115: Isomap START
> test_pipeop_isomap.R: 2026-04-21 03:10:34.375512: constructing knn graph
> test_pipeop_isomap.R: 2026-04-21 03:10:34.39682: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-21 03:10:34.465637: Classical Scaling
> test_pipeop_isomap.R: 2026-04-21 03:10:34.541085: L-Isomap embed START
> test_pipeop_isomap.R: 2026-04-21 03:10:34.542035: constructing knn graph
> test_pipeop_isomap.R: 2026-04-21 03:10:34.59497: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-21 03:10:34.699936: embedding
> test_pipeop_isomap.R: 2026-04-21 03:10:34.701413: DONE
> test_pipeop_isomap.R: 2026-04-21 03:10:34.925772: Isomap START
> test_pipeop_isomap.R: 2026-04-21 03:10:34.926162: constructing knn graph
> test_pipeop_isomap.R: 2026-04-21 03:10:34.991623: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-21 03:10:35.05961: Classical Scaling
> test_pipeop_isomap.R: 2026-04-21 03:10:35.17763: L-Isomap embed START
> test_pipeop_isomap.R: 2026-04-21 03:10:35.178081: constructing knn graph
> test_pipeop_isomap.R: 2026-04-21 03:10:35.198367: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-21 03:10:35.284368: embedding
> test_pipeop_isomap.R: 2026-04-21 03:10:35.285629: DONE
> test_pipeop_isomap.R: 2026-04-21 03:10:35.438055: Isomap START
> test_pipeop_isomap.R: 2026-04-21 03:10:35.438343: constructing knn graph
> test_pipeop_isomap.R: 2026-04-21 03:10:35.445796: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-21 03:10:35.485434: Classical Scaling
> test_pipeop_isomap.R: 2026-04-21 03:10:35.617475: Isomap START
> test_pipeop_isomap.R: 2026-04-21 03:10:35.617792: constructing knn graph
> test_pipeop_isomap.R: 2026-04-21 03:10:35.626782: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-21 03:10:35.661039: Classical Scaling
> test_pipeop_isomap.R: 2026-04-21 03:10:35.72156: Isomap START
> test_pipeop_isomap.R: 2026-04-21 03:10:35.722194: constructing knn graph
> test_pipeop_isomap.R: 2026-04-21 03:10:35.735887: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-21 03:10:35.767637: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_dictionary.R:7:3', 'test_mlr_graphs_branching.R:26:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_info.R:3:1', 'test_pipeop_impute.R:4:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3',
'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3',
'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3',
'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3',
'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3',
'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3',
'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3',
'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3',
'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3',
'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3',
'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3',
'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3',
'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1',
'test_pipeop_splines.R:3:1', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.11.0
Check: tests
Result: ERROR
Running 'testthat.R' [244s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-04-20 16:01:57.210626: Isomap START
> test_pipeop_isomap.R: 2026-04-20 16:01:57.211805: constructing knn graph
> test_pipeop_isomap.R: 2026-04-20 16:01:57.228323: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-20 16:01:57.250734: Classical Scaling
> test_pipeop_isomap.R: 2026-04-20 16:01:57.370661: Isomap START
> test_pipeop_isomap.R: 2026-04-20 16:01:57.371297: constructing knn graph
> test_pipeop_isomap.R: 2026-04-20 16:01:57.381626: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-20 16:01:57.404293: Classical Scaling
> test_pipeop_isomap.R: 2026-04-20 16:01:57.447789: L-Isomap embed START
> test_pipeop_isomap.R: 2026-04-20 16:01:57.448699: constructing knn graph
> test_pipeop_isomap.R: 2026-04-20 16:01:57.468846: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-20 16:01:57.519408: embedding
> test_pipeop_isomap.R: 2026-04-20 16:01:57.521355: DONE
> test_pipeop_isomap.R: 2026-04-20 16:01:57.560746: L-Isomap embed START
> test_pipeop_isomap.R: 2026-04-20 16:01:57.561202: constructing knn graph
> test_pipeop_isomap.R: 2026-04-20 16:01:57.579304: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-20 16:01:57.628353: embedding
> test_pipeop_isomap.R: 2026-04-20 16:01:57.630142: DONE
> test_pipeop_isomap.R: 2026-04-20 16:01:57.759119: Isomap START
> test_pipeop_isomap.R: 2026-04-20 16:01:57.759775: constructing knn graph
> test_pipeop_isomap.R: 2026-04-20 16:01:57.782542: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-20 16:01:57.890185: Classical Scaling
> test_pipeop_isomap.R: 2026-04-20 16:01:57.997711: L-Isomap embed START
> test_pipeop_isomap.R: 2026-04-20 16:01:57.998837: constructing knn graph
> test_pipeop_isomap.R: 2026-04-20 16:01:58.048235: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-20 16:01:58.283767: embedding
> test_pipeop_isomap.R: 2026-04-20 16:01:58.289548: DONE
> test_pipeop_isomap.R: 2026-04-20 16:01:58.524629: Isomap START
> test_pipeop_isomap.R: 2026-04-20 16:01:58.525283: constructing knn graph
> test_pipeop_isomap.R: 2026-04-20 16:01:58.535815: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-20 16:01:58.557632: Classical Scaling
> test_pipeop_isomap.R: 2026-04-20 16:01:58.611652: L-Isomap embed START
> test_pipeop_isomap.R: 2026-04-20 16:01:58.612564: constructing knn graph
> test_pipeop_isomap.R: 2026-04-20 16:01:58.646409: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-20 16:01:58.693484: embedding
> test_pipeop_isomap.R: 2026-04-20 16:01:58.695126: DONE
> test_pipeop_isomap.R: 2026-04-20 16:01:58.912592: Isomap START
> test_pipeop_isomap.R: 2026-04-20 16:01:58.913287: constructing knn graph
> test_pipeop_isomap.R: 2026-04-20 16:01:58.923368: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-20 16:01:58.942939: Classical Scaling
> test_pipeop_isomap.R: 2026-04-20 16:01:59.000499: L-Isomap embed START
> test_pipeop_isomap.R: 2026-04-20 16:01:59.001225: constructing knn graph
> test_pipeop_isomap.R: 2026-04-20 16:01:59.01539: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-20 16:01:59.055565: embedding
> test_pipeop_isomap.R: 2026-04-20 16:01:59.057192: DONE
> test_pipeop_isomap.R: 2026-04-20 16:01:59.188412: Isomap START
> test_pipeop_isomap.R: 2026-04-20 16:01:59.189093: constructing knn graph
> test_pipeop_isomap.R: 2026-04-20 16:01:59.200975: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-20 16:01:59.223958: Classical Scaling
> test_pipeop_isomap.R: 2026-04-20 16:01:59.32014: L-Isomap embed START
> test_pipeop_isomap.R: 2026-04-20 16:01:59.320767: constructing knn graph
> test_pipeop_isomap.R: 2026-04-20 16:01:59.338418: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-20 16:01:59.374184: embedding
> test_pipeop_isomap.R: 2026-04-20 16:01:59.375367: DONE
> test_pipeop_isomap.R: 2026-04-20 16:01:59.496109: Isomap START
> test_pipeop_isomap.R: 2026-04-20 16:01:59.496787: constructing knn graph
> test_pipeop_isomap.R: 2026-04-20 16:01:59.508642: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-20 16:01:59.530974: Classical Scaling
> test_pipeop_isomap.R: 2026-04-20 16:01:59.601078: L-Isomap embed START
> test_pipeop_isomap.R: 2026-04-20 16:01:59.601824: constructing knn graph
> test_pipeop_isomap.R: 2026-04-20 16:01:59.617903: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-20 16:01:59.659299: embedding
> test_pipeop_isomap.R: 2026-04-20 16:01:59.661537: DONE
> test_pipeop_isomap.R: 2026-04-20 16:01:59.798523: Isomap START
> test_pipeop_isomap.R: 2026-04-20 16:01:59.799216: constructing knn graph
> test_pipeop_isomap.R: 2026-04-20 16:01:59.820673: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-20 16:01:59.837467: Classical Scaling
> test_pipeop_isomap.R: 2026-04-20 16:01:59.910402: L-Isomap embed START
> test_pipeop_isomap.R: 2026-04-20 16:01:59.911307: constructing knn graph
> test_pipeop_isomap.R: 2026-04-20 16:01:59.930202: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-20 16:01:59.972949: embedding
> test_pipeop_isomap.R: 2026-04-20 16:01:59.974534: DONE
> test_pipeop_isomap.R: 2026-04-20 16:02:00.106229: Isomap START
> test_pipeop_isomap.R: 2026-04-20 16:02:00.106822: constructing knn graph
> test_pipeop_isomap.R: 2026-04-20 16:02:00.116263: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-20 16:02:00.137774: Classical Scaling
> test_pipeop_isomap.R: 2026-04-20 16:02:00.258523: Isomap START
> test_pipeop_isomap.R: 2026-04-20 16:02:00.25915: constructing knn graph
> test_pipeop_isomap.R: 2026-04-20 16:02:00.269277: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-20 16:02:00.291571: Classical Scaling
> test_pipeop_isomap.R: 2026-04-20 16:02:00.327848: Isomap START
> test_pipeop_isomap.R: 2026-04-20 16:02:00.328458: constructing knn graph
> test_pipeop_isomap.R: 2026-04-20 16:02:00.350865: calculating geodesic distances
> test_pipeop_isomap.R: 2026-04-20 16:02:00.373097: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_dictionary.R:7:3', 'test_mlr_graphs_branching.R:26:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_ensemble.R:3:1', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_info.R:3:1', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:3:3',
'test_pipeop_learnercv.R:43:3', 'test_pipeop_learnercv.R:73:3',
'test_pipeop_learnercv.R:92:3', 'test_pipeop_learnercv.R:141:3',
'test_pipeop_learnercv.R:157:3', 'test_pipeop_learnercv.R:203:3',
'test_pipeop_learnercv.R:249:3', 'test_pipeop_learnercv.R:278:3',
'test_pipeop_learnercv.R:332:3', 'test_pipeop_learnercv.R:359:3',
'test_pipeop_learnercv.R:389:3', 'test_pipeop_learnercv.R:399:3',
'test_pipeop_learnercv.R:432:3', 'test_pipeop_learnercv.R:472:3',
'test_pipeop_learnercv.R:481:3', 'test_pipeop_learnercv.R:498:3',
'test_pipeop_learnercv.R:506:3', 'test_pipeop_learnercv.R:530:3',
'test_pipeop_learnercv.R:554:3', 'test_pipeop_learnercv.R:634:3',
'test_pipeop_learnercv.R:654:3', 'test_pipeop_learnercv.R:669:3',
'test_pipeop_learnercv.R:754:3', 'test_pipeop_learnercv.R:799:3',
'test_pipeop_learnercv.R:827:3', 'test_pipeop_mutate.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1',
'test_pipeop_splines.R:3:1', 'test_pipeop_nmf.R:6:3',
'test_pipeop_targetinvert.R:4:3', 'test_pipeop_subsample.R:6:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_typecheck.R:188:3',
'test_pipeop_tunethreshold.R:111:3', 'test_pipeop_tunethreshold.R:191:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64