scPipeline: A Wrapper for 'Seurat' and Related R Packages for End-to-End Single Cell Analysis

Reports markers list, differentially expressed genes, associated pathways, cell-type annotations, does batch correction and other related single cell analyses all wrapped within 'Seurat'.

Version: 0.2.0.0
Imports: Seurat, batchelor, dplyr, ReactomeGSA, celldex, SingleR, SummarizedExperiment, biomaRt, magrittr, rlang
Suggests: knitr, rmarkdown
Published: 2025-03-07
DOI: 10.32614/CRAN.package.scPipeline
Author: Viswanadham Sridhara ORCID iD [aut, cre]
Maintainer: Viswanadham Sridhara <Sridhara.Omics at gmail.com>
License: MIT + file LICENSE
NeedsCompilation: no
Materials: README, NEWS
CRAN checks: scPipeline results

Documentation:

Reference manual: scPipeline.html , scPipeline.pdf
Vignettes: Introduction to myPackage (source, R code)

Downloads:

Package source: scPipeline_0.2.0.0.tar.gz
Windows binaries: r-devel: scPipeline_0.2.0.0.zip, r-release: scPipeline_0.2.0.0.zip, r-oldrel: scPipeline_0.2.0.0.zip
macOS binaries: r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): not available

Linking:

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