Last updated on 2026-02-17 11:54:11 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 15.02 | 142.34 | 157.36 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 9.88 | 97.09 | 106.97 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 24.00 | 224.31 | 248.31 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 23.00 | 224.43 | 247.43 | OK | |
| r-devel-macos-arm64 | 0.1.0 | 3.00 | 60.00 | 63.00 | OK | |
| r-devel-windows-x86_64 | 0.1.0 | 16.00 | 179.00 | 195.00 | OK | |
| r-patched-linux-x86_64 | 0.1.0 | 15.75 | 130.31 | 146.06 | OK | |
| r-release-linux-x86_64 | 0.1.0 | 12.99 | 130.27 | 143.26 | OK | |
| r-release-macos-arm64 | 0.1.0 | OK | ||||
| r-release-macos-x86_64 | 0.1.0 | 9.00 | 148.00 | 157.00 | OK | |
| r-release-windows-x86_64 | 0.1.0 | 17.00 | 174.00 | 191.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.0 | OK | ||||
| r-oldrel-macos-x86_64 | 0.1.0 | 9.00 | 153.00 | 162.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.0 | 22.00 | 217.00 | 239.00 | OK |
Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Comparing_Search_Strategies_with_searchAnalyzeR.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘Comparing_Search_Strategies_with_searchAnalyzeR.Rmd’
--- re-building ‘Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd’ using rmarkdown
Quitting from Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd:106-117 [execute-search]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `ans[[1]]`:
! subscript out of bounds
---
Backtrace:
▆
1. └─searchAnalyzeR::search_pubmed(...)
2. └─rentrez::entrez_search(...)
3. ├─rentrez:::parse_esearch(parsed, history = use_history)
4. └─rentrez:::parse_esearch.XMLInternalDocument(parsed, history = use_history)
5. ├─XML::xmlValue(x[["/eSearchResult/Count"]])
6. ├─x[["/eSearchResult/Count"]]
7. └─XML:::`[[.XMLInternalDocument`(x, "/eSearchResult/Count")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd’
SUMMARY: processing the following file failed:
‘Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc