CRAN Package Check Results for Package openEBGM

Last updated on 2021-07-27 09:53:30 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.8.3 6.84 258.85 265.69 OK
r-devel-linux-x86_64-debian-gcc 0.8.3 5.63 171.43 177.06 OK
r-devel-linux-x86_64-fedora-clang 0.8.3 306.92 OK
r-devel-linux-x86_64-fedora-gcc 0.8.3 292.01 OK
r-devel-windows-x86_64 0.8.3 13.00 326.00 339.00 OK
r-devel-windows-x86_64-gcc10-UCRT 0.8.3 OK
r-patched-linux-x86_64 0.8.3 6.45 231.90 238.35 OK
r-patched-solaris-x86 0.8.3 477.90 OK
r-release-linux-x86_64 0.8.3 6.99 231.64 238.63 OK
r-release-macos-arm64 0.8.3 WARN
r-release-macos-x86_64 0.8.3 OK
r-release-windows-ix86+x86_64 0.8.3 16.00 271.00 287.00 OK
r-oldrel-macos-x86_64 0.8.3 OK
r-oldrel-windows-ix86+x86_64 0.8.3 13.00 319.00 332.00 OK

Check Details

Version: 0.8.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘x1_introAndDataPrepVignette.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    --- finished re-building ‘x1_introAndDataPrepVignette.Rmd’
    
    --- re-building ‘x2_rawDataProcessingVignette.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    --- finished re-building ‘x2_rawDataProcessingVignette.Rmd’
    
    --- re-building ‘x3_hyperParameterVignette.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Warning in dnbinom(ni, size = size_f1, prob = prob_f1) : NaNs produced
    Warning in dnbinom(ni, size = size_f2, prob = prob_f2) : NaNs produced
    Warning in pnbinom(sum_limit, size = size_f1, prob = prob_f1) :
     NaNs produced
    Warning in pnbinom(sum_limit, size = size_f2, prob = prob_f2) :
     NaNs produced
    Warning in stats::nlm(negLLsquash, p = theta_init, ni = squashed$N, ei = squashed$E, :
     NA/Inf replaced by maximum positive value
    Warning in dnbinom(ni, size = size_f1, prob = prob_f1) : NaNs produced
    Warning in pnbinom(sum_limit, size = size_f1, prob = prob_f1) :
     NaNs produced
    Warning in stats::nlm(negLLsquash, p = theta_init, ni = squashed$N, ei = squashed$E, :
     NA/Inf replaced by maximum positive value
    Warning in dnbinom(ni, size = size_f1, prob = prob_f1) : NaNs produced
    Warning in pnbinom(sum_limit, size = size_f1, prob = prob_f1) :
     NaNs produced
    Warning in stats::nlm(negLLsquash, p = theta_init, ni = squashed$N, ei = squashed$E, :
     NA/Inf replaced by maximum positive value
    Warning in dnbinom(ni, size = size_f1, prob = prob_f1) : NaNs produced
    Warning in pnbinom(sum_limit, size = size_f1, prob = prob_f1) :
     NaNs produced
    Warning in stats::nlm(negLLsquash, p = theta_init, ni = squashed$N, ei = squashed$E, :
     NA/Inf replaced by maximum positive value
    Warning in dnbinom(ni, size = size_f1, prob = prob_f1) : NaNs produced
    Warning in dnbinom(ni, size = size_f2, prob = prob_f2) : NaNs produced
    Warning in pnbinom(sum_limit, size = size_f1, prob = prob_f1) :
     NaNs produced
    Warning in pnbinom(sum_limit, size = size_f2, prob = prob_f2) :
     NaNs produced
    Warning in stats::nlm(negLLsquash, p = theta_init, ni = squashed$N, ei = squashed$E, :
     NA/Inf replaced by maximum positive value
    Warning in dnbinom(ni, size = size_f1, prob = prob_f1) : NaNs produced
    Warning in dnbinom(ni, size = size_f2, prob = prob_f2) : NaNs produced
    Warning in pnbinom(sum_limit, size = size_f1, prob = prob_f1) :
     NaNs produced
    Warning in pnbinom(sum_limit, size = size_f2, prob = prob_f2) :
     NaNs produced
    Warning in stats::nlm(negLLsquash, p = theta_init, ni = squashed$N, ei = squashed$E, :
     NA/Inf replaced by maximum positive value
    Warning in dnbinom(ni, size = size_f1, prob = prob_f1) : NaNs produced
    Warning in pnbinom(sum_limit, size = size_f1, prob = prob_f1) :
     NaNs produced
    Warning in stats::nlm(negLLsquash, p = theta_init, ni = squashed$N, ei = squashed$E, :
     NA/Inf replaced by maximum positive value
    Warning in dnbinom(N, size = size_f1, prob = prob_f1) : NaNs produced
    Warning in pnbinom(sum_limit, size = size_f1, prob = prob_f1) :
     NaNs produced
    Warning in nlminb(start = as.numeric(theta_init[i, ]), objective = negLL, :
     NA/NaN function evaluation
    Warning in dnbinom(N, size = size_f1, prob = prob_f1) : NaNs produced
    Warning in pnbinom(sum_limit, size = size_f1, prob = prob_f1) :
     NaNs produced
    Warning in nlminb(start = as.numeric(theta_init[i, ]), objective = negLL, :
     NA/NaN function evaluation
    Warning in dnbinom(ni, size = size_f1, prob = prob_f1) : NaNs produced
    Warning in pnbinom(sum_limit, size = size_f1, prob = prob_f1) :
     NaNs produced
    Warning in nlminb(start = as.numeric(theta_init[i, ]), objective = negLLsquash, :
     NA/NaN function evaluation
    Warning in dnbinom(ni, size = size_f1, prob = prob_f1) : NaNs produced
    Warning in pnbinom(sum_limit, size = size_f1, prob = prob_f1) :
     NaNs produced
    Warning in nlminb(start = as.numeric(theta_init[i, ]), objective = negLLsquash, :
     NA/NaN function evaluation
    Warning in dnbinom(ni, size = size_f1, prob = prob_f1) : NaNs produced
    Warning in pnbinom(sum_limit, size = size_f1, prob = prob_f1) :
     NaNs produced
    Warning in nlminb(start = as.numeric(theta_init[i, ]), objective = negLLsquash, :
     NA/NaN function evaluation
    Warning in dnbinom(ni, size = size_f1, prob = prob_f1) : NaNs produced
    Warning in pnbinom(sum_limit, size = size_f1, prob = prob_f1) :
     NaNs produced
    Warning in nlminb(start = as.numeric(theta_init[i, ]), objective = negLLsquash, :
     NA/NaN function evaluation
    Warning in dnbinom(ni, size = size_f1, prob = prob_f1) : NaNs produced
    Warning in pnbinom(sum_limit, size = size_f1, prob = prob_f1) :
     NaNs produced
    Warning in nlminb(start = as.numeric(theta_init[i, ]), objective = negLLsquash, :
     NA/NaN function evaluation
    Warning in dnbinom(ni, size = size_f1, prob = prob_f1) : NaNs produced
    Warning in pnbinom(sum_limit, size = size_f1, prob = prob_f1) :
     NaNs produced
    Warning in nlminb(start = as.numeric(theta_init[i, ]), objective = negLLsquash, :
     NA/NaN function evaluation
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, :
     no font could be found for family "Arial"
    Quitting from lines 279-290 (x3_hyperParameterVignette.Rmd)
    Error: processing vignette 'x3_hyperParameterVignette.Rmd' failed with diagnostics:
    polygon edge not found
    --- failed re-building ‘x3_hyperParameterVignette.Rmd’
    
    --- re-building ‘x4_posteriorCalculationVignette.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Warning in log((P * f_star1) + ((1 - P) * f_star2)) : NaNs produced
    Warning in nlminb(start = as.numeric(theta_init[i, ]), objective = negLLsquash, :
     NA/NaN function evaluation
    Warning in dnbinom(ni, size = size_f2, prob = prob_f2) : NaNs produced
    Warning in pnbinom(sum_limit, size = size_f2, prob = prob_f2) :
     NaNs produced
    Warning in nlminb(start = as.numeric(theta_init[i, ]), objective = negLLsquash, :
     NA/NaN function evaluation
    Warning in dnbinom(ni, size = size_f1, prob = prob_f1) : NaNs produced
    Warning in pnbinom(sum_limit, size = size_f1, prob = prob_f1) :
     NaNs produced
    Warning in nlminb(start = as.numeric(theta_init[i, ]), objective = negLLsquash, :
     NA/NaN function evaluation
    Warning in log((P * f_star1) + ((1 - P) * f_star2)) : NaNs produced
    Warning in nlminb(start = as.numeric(theta_init[i, ]), objective = negLLsquash, :
     NA/NaN function evaluation
    --- finished re-building ‘x4_posteriorCalculationVignette.Rmd’
    
    --- re-building ‘x5_openEBGMObjectVignette.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Warning in log((P * f_star1) + ((1 - P) * f_star2)) : NaNs produced
    Warning in nlminb(start = as.numeric(theta_init[i, ]), objective = negLLsquash, :
     NA/NaN function evaluation
    Warning in log((P * f_star1) + ((1 - P) * f_star2)) : NaNs produced
    Warning in nlminb(start = as.numeric(theta_init[i, ]), objective = negLLsquash, :
     NA/NaN function evaluation
    Warning in dnbinom(ni, size = size_f1, prob = prob_f1) : NaNs produced
    Warning in pnbinom(sum_limit, size = size_f1, prob = prob_f1) :
     NaNs produced
    Warning in nlminb(start = as.numeric(theta_init[i, ]), objective = negLLsquash, :
     NA/NaN function evaluation
    Warning in dnbinom(ni, size = size_f2, prob = prob_f2) : NaNs produced
    Warning in pnbinom(sum_limit, size = size_f2, prob = prob_f2) :
     NaNs produced
    Warning in nlminb(start = as.numeric(theta_init[i, ]), objective = negLLsquash, :
     NA/NaN function evaluation
    Warning in log((P * f_star1) + ((1 - P) * f_star2)) : NaNs produced
    Warning in nlminb(start = as.numeric(theta_init[i, ]), objective = negLLsquash, :
     NA/NaN function evaluation
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Quitting from lines 97-98 (x5_openEBGMObjectVignette.Rmd)
    Error: processing vignette 'x5_openEBGMObjectVignette.Rmd' failed with diagnostics:
    polygon edge not found
    --- failed re-building ‘x5_openEBGMObjectVignette.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘x3_hyperParameterVignette.Rmd’ ‘x5_openEBGMObjectVignette.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-macos-arm64