CRAN Package Check Results for Package o2geosocial

Last updated on 2021-07-25 09:50:27 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.1 59.39 444.57 503.96 OK
r-devel-linux-x86_64-debian-gcc 1.0.1 41.35 311.59 352.94 OK
r-devel-linux-x86_64-fedora-clang 1.0.1 652.77 OK
r-devel-linux-x86_64-fedora-gcc 1.0.1 596.26 OK
r-devel-windows-x86_64 1.0.1 53.00 369.00 422.00 OK
r-devel-windows-x86_64-gcc10-UCRT 1.0.1 OK
r-patched-linux-x86_64 1.0.1 46.38 399.55 445.93 OK
r-patched-solaris-x86 1.0.1 818.80 OK
r-release-linux-x86_64 1.0.1 40.55 393.35 433.90 OK
r-release-macos-arm64 1.0.1 WARN
r-release-macos-x86_64 1.0.1 OK
r-release-windows-ix86+x86_64 1.0.1 128.00 441.00 569.00 OK
r-oldrel-macos-x86_64 1.0.1 OK
r-oldrel-windows-ix86+x86_64 1.0.1 136.00 565.00 701.00 OK

Check Details

Version: 1.0.1
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: 'tigris', 'sf'
Flavor: r-release-macos-arm64

Version: 1.0.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘o2geosocial.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Registered S3 methods overwritten by 'o2geosocial':
     method from
     plot.outbreaker_chains outbreaker2
     print.custom_likelihoods outbreaker2
     print.custom_priors outbreaker2
     print.outbreaker_chains outbreaker2
     summary.outbreaker_chains outbreaker2
    Using POLYMOD social contact data. To cite this in a publication, use the 'cite' function
    Warning in outbreaker_data(dates = dt_cases$Date, age_group = dt_cases$age_group, :
     Removed trailing zeroes found in w_dens
    Warning in outbreaker_data(data = data) :
     Removed trailing zeroes found in w_dens
    Warning in outbreaker_data(data = pre_clust[["data"]]) :
     Removed trailing zeroes found in w_dens
    Warning in outbreaker_data(dates = dt_cases$Date, age_group = dt_cases$age_group, :
     Removed trailing zeroes found in w_dens
    Warning in outbreaker_data(data = data) :
     Removed trailing zeroes found in w_dens
    Warning in outbreaker_data(data = pre_clust[["data"]]) :
     Removed trailing zeroes found in w_dens
    Warning in arrows(b[1, ], clust_infer1["1st Qu.", ], b[1, ], clust_infer1["3rd Qu.", :
     zero-length arrow is of indeterminate angle and so skipped
    Warning in arrows(b[1, ], clust_infer1["1st Qu.", ], b[1, ], clust_infer1["3rd Qu.", :
     zero-length arrow is of indeterminate angle and so skipped
    Warning in arrows(b[2, ], clust_infer2["1st Qu.", ], b[2, ], clust_infer2["3rd Qu.", :
     zero-length arrow is of indeterminate angle and so skipped
    Warning in arrows(b[2, ], clust_infer2["1st Qu.", ], b[2, ], clust_infer2["3rd Qu.", :
     zero-length arrow is of indeterminate angle and so skipped
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     zero-length arrow is of indeterminate angle and so skipped
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     zero-length arrow is of indeterminate angle and so skipped
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     zero-length arrow is of indeterminate angle and so skipped
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     zero-length arrow is of indeterminate angle and so skipped
    Quitting from lines 361-370 (o2geosocial.Rmd)
    Error: processing vignette 'o2geosocial.Rmd' failed with diagnostics:
    there is no package called 'tigris'
    --- failed re-building ‘o2geosocial.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘o2geosocial.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-macos-arm64