Last updated on 2026-01-29 10:51:45 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 36.93 | 819.15 | 856.08 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 22.25 | 537.87 | 560.12 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 69.00 | 1351.47 | 1420.47 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 64.00 | 1282.99 | 1346.99 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 40.00 | 578.00 | 618.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 53.83 | 752.54 | 806.37 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 33.01 | 730.59 | 763.60 | OK | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 26.00 | 542.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 39.00 | 537.00 | 576.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 8.00 | 125.00 | 133.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 25.00 | 699.00 | 724.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 53.00 | 676.00 | 729.00 | ERROR |
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [114s/57s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-29 22:00:25.096905: Isomap START
> test_pipeop_isomap.R: 2026-01-29 22:00:25.097157: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 22:00:25.100328: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 22:00:25.106436: Classical Scaling
> test_pipeop_isomap.R: 2026-01-29 22:00:25.117976: Isomap START
> test_pipeop_isomap.R: 2026-01-29 22:00:25.118177: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 22:00:25.120617: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 22:00:25.126826: Classical Scaling
> test_pipeop_isomap.R: 2026-01-29 22:00:25.134375: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-29 22:00:25.134598: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 22:00:25.139279: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 22:00:25.154454: embedding
> test_pipeop_isomap.R: 2026-01-29 22:00:25.154922: DONE
> test_pipeop_isomap.R: 2026-01-29 22:00:25.161553: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-29 22:00:25.161725: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 22:00:25.166475: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 22:00:25.181407: embedding
> test_pipeop_isomap.R: 2026-01-29 22:00:25.181911: DONE
> test_pipeop_isomap.R: 2026-01-29 22:00:25.203626: Isomap START
> test_pipeop_isomap.R: 2026-01-29 22:00:25.203753: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 22:00:25.214229: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 22:00:25.247729: Classical Scaling
> test_pipeop_isomap.R: 2026-01-29 22:00:25.256337: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-29 22:00:25.256541: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 22:00:25.26485: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 22:00:25.340962: embedding
> test_pipeop_isomap.R: 2026-01-29 22:00:25.342016: DONE
> test_pipeop_isomap.R: 2026-01-29 22:00:25.37675: Isomap START
> test_pipeop_isomap.R: 2026-01-29 22:00:25.376903: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 22:00:25.379301: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 22:00:25.385302: Classical Scaling
> test_pipeop_isomap.R: 2026-01-29 22:00:25.394013: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-29 22:00:25.394259: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 22:00:25.404756: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 22:00:25.419321: embedding
> test_pipeop_isomap.R: 2026-01-29 22:00:25.419798: DONE
> test_pipeop_isomap.R: 2026-01-29 22:00:25.452669: Isomap START
> test_pipeop_isomap.R: 2026-01-29 22:00:25.452813: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 22:00:25.455203: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 22:00:25.461237: Classical Scaling
> test_pipeop_isomap.R: 2026-01-29 22:00:25.473028: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-29 22:00:25.47323: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 22:00:25.477898: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 22:00:25.492669: embedding
> test_pipeop_isomap.R: 2026-01-29 22:00:25.493115: DONE
> test_pipeop_isomap.R: 2026-01-29 22:00:25.51389: Isomap START
> test_pipeop_isomap.R: 2026-01-29 22:00:25.514047: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 22:00:25.516481: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 22:00:25.522587: Classical Scaling
> test_pipeop_isomap.R: 2026-01-29 22:00:25.535114: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-29 22:00:25.535326: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 22:00:25.546426: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 22:00:25.561454: embedding
> test_pipeop_isomap.R: 2026-01-29 22:00:25.561861: DONE
> test_pipeop_isomap.R: 2026-01-29 22:00:25.582751: Isomap START
> test_pipeop_isomap.R: 2026-01-29 22:00:25.582921: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 22:00:25.585345: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 22:00:25.591371: Classical Scaling
> test_pipeop_isomap.R: 2026-01-29 22:00:25.603865: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-29 22:00:25.604107: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 22:00:25.608637: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 22:00:25.62353: embedding
> test_pipeop_isomap.R: 2026-01-29 22:00:25.623979: DONE
> test_pipeop_isomap.R: 2026-01-29 22:00:25.643575: Isomap START
> test_pipeop_isomap.R: 2026-01-29 22:00:25.643749: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 22:00:25.646134: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 22:00:25.65224: Classical Scaling
> test_pipeop_isomap.R: 2026-01-29 22:00:25.665579: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-29 22:00:25.6658: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 22:00:25.67613: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 22:00:25.691085: embedding
> test_pipeop_isomap.R: 2026-01-29 22:00:25.691675: DONE
> test_pipeop_isomap.R: 2026-01-29 22:00:25.714508: Isomap START
> test_pipeop_isomap.R: 2026-01-29 22:00:25.714673: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 22:00:25.716937: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 22:00:25.723305: Classical Scaling
> test_pipeop_isomap.R: 2026-01-29 22:00:25.741288: Isomap START
> test_pipeop_isomap.R: 2026-01-29 22:00:25.741434: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 22:00:25.743765: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 22:00:25.749679: Classical Scaling
> test_pipeop_isomap.R: 2026-01-29 22:00:25.755277: Isomap START
> test_pipeop_isomap.R: 2026-01-29 22:00:25.755407: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 22:00:25.757714: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 22:00:25.763602: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [324s/375s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-29 02:39:01.623018: Isomap START
> test_pipeop_isomap.R: 2026-01-29 02:39:01.623556: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 02:39:01.644384: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 02:39:01.684658: Classical Scaling
> test_pipeop_isomap.R: 2026-01-29 02:39:01.915834: Isomap START
> test_pipeop_isomap.R: 2026-01-29 02:39:01.916138: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 02:39:01.942264: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 02:39:01.996086: Classical Scaling
> test_pipeop_isomap.R: 2026-01-29 02:39:02.043016: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-29 02:39:02.043442: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 02:39:02.07158: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 02:39:02.164281: embedding
> test_pipeop_isomap.R: 2026-01-29 02:39:02.165391: DONE
> test_pipeop_isomap.R: 2026-01-29 02:39:02.228098: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-29 02:39:02.228416: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 02:39:02.275772: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 02:39:02.372469: embedding
> test_pipeop_isomap.R: 2026-01-29 02:39:02.37361: DONE
> test_pipeop_isomap.R: 2026-01-29 02:39:02.547902: Isomap START
> test_pipeop_isomap.R: 2026-01-29 02:39:02.54843: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 02:39:02.592009: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 02:39:02.860358: Classical Scaling
> test_pipeop_isomap.R: 2026-01-29 02:39:02.94295: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-29 02:39:02.943376: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 02:39:03.024655: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 02:39:03.593599: embedding
> test_pipeop_isomap.R: 2026-01-29 02:39:04.302345: DONE
> test_pipeop_isomap.R: 2026-01-29 02:39:04.592576: Isomap START
> test_pipeop_isomap.R: 2026-01-29 02:39:04.592872: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 02:39:04.627146: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 02:39:04.658863: Classical Scaling
> test_pipeop_isomap.R: 2026-01-29 02:39:04.722329: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-29 02:39:04.722761: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 02:39:04.739595: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 02:39:04.831477: embedding
> test_pipeop_isomap.R: 2026-01-29 02:39:04.832567: DONE
> test_pipeop_isomap.R: 2026-01-29 02:39:05.092833: Isomap START
> test_pipeop_isomap.R: 2026-01-29 02:39:05.093121: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 02:39:05.127895: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 02:39:05.157999: Classical Scaling
> test_pipeop_isomap.R: 2026-01-29 02:39:05.260395: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-29 02:39:05.260826: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 02:39:05.291753: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 02:39:05.392601: embedding
> test_pipeop_isomap.R: 2026-01-29 02:39:05.393684: DONE
> test_pipeop_isomap.R: 2026-01-29 02:39:05.553839: Isomap START
> test_pipeop_isomap.R: 2026-01-29 02:39:05.55413: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 02:39:05.560763: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 02:39:05.609399: Classical Scaling
> test_pipeop_isomap.R: 2026-01-29 02:39:05.71434: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-29 02:39:05.714797: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 02:39:05.767978: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 02:39:05.879229: embedding
> test_pipeop_isomap.R: 2026-01-29 02:39:05.880296: DONE
> test_pipeop_isomap.R: 2026-01-29 02:39:06.036206: Isomap START
> test_pipeop_isomap.R: 2026-01-29 02:39:06.037341: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 02:39:06.055485: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 02:39:06.130891: Classical Scaling
> test_pipeop_isomap.R: 2026-01-29 02:39:06.230556: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-29 02:39:06.230978: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 02:39:06.258637: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 02:39:06.377801: embedding
> test_pipeop_isomap.R: 2026-01-29 02:39:06.378927: DONE
> test_pipeop_isomap.R: 2026-01-29 02:39:06.525451: Isomap START
> test_pipeop_isomap.R: 2026-01-29 02:39:06.525736: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 02:39:06.533616: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 02:39:06.582749: Classical Scaling
> test_pipeop_isomap.R: 2026-01-29 02:39:06.70484: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-29 02:39:06.706349: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 02:39:06.760652: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 02:39:06.871893: embedding
> test_pipeop_isomap.R: 2026-01-29 02:39:06.873106: DONE
> test_pipeop_isomap.R: 2026-01-29 02:39:07.051238: Isomap START
> test_pipeop_isomap.R: 2026-01-29 02:39:07.051552: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 02:39:07.111369: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 02:39:07.164492: Classical Scaling
> test_pipeop_isomap.R: 2026-01-29 02:39:07.312648: Isomap START
> test_pipeop_isomap.R: 2026-01-29 02:39:07.312954: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 02:39:07.335033: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 02:39:07.382336: Classical Scaling
> test_pipeop_isomap.R: 2026-01-29 02:39:07.410158: Isomap START
> test_pipeop_isomap.R: 2026-01-29 02:39:07.410459: constructing knn graph
> test_pipeop_isomap.R: 2026-01-29 02:39:07.432184: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-29 02:39:07.477791: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [294s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-23 21:16:27.219948: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:27.220987: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:27.236572: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:27.260744: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:27.378932: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:27.379508: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:27.387638: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:27.402754: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:27.446137: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:27.447119: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:27.468526: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:27.51888: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:27.520702: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:27.550695: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:27.551402: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:27.566254: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:27.61067: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:27.612635: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:27.744686: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:27.745308: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:27.765965: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:27.876698: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:27.9247: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:27.925702: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:27.98113: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:28.212569: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:28.217711: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:28.454488: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:28.455112: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:28.466487: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:28.489004: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:28.542654: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:28.543563: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:28.567087: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:28.616799: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:28.618684: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:28.879887: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:28.880703: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:28.893513: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:28.916254: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:29.00898: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:29.010139: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:29.033639: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:29.084773: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:29.0866: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:29.225234: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:29.225898: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:29.238092: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:29.260775: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:29.333826: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:29.334764: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:29.35337: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:29.39555: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:29.397577: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:29.507543: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:29.507999: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:29.533037: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:29.552449: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:29.627045: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:29.627846: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:29.64328: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:29.689077: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:29.690683: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:29.810192: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:29.810861: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:29.823068: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:29.845674: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:29.92462: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:29.925551: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:29.949145: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:30.000386: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:30.00223: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:30.140067: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:30.140706: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:30.167155: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:30.189673: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:30.290376: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:30.290869: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:30.299982: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:30.315442: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:30.34708: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:30.347551: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:30.357353: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:30.378585: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_colapply.R:9:3', 'test_pipeop_collapsefactors.R:6:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64