CRAN Package Check Results for Package loose.rock

Last updated on 2021-07-27 09:53:25 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.0 5.67 111.43 117.10 OK
r-devel-linux-x86_64-debian-gcc 1.2.0 4.18 82.02 86.20 OK
r-devel-linux-x86_64-fedora-clang 1.2.0 145.17 OK
r-devel-linux-x86_64-fedora-gcc 1.2.0 129.25 OK
r-devel-windows-x86_64 1.2.0 9.00 202.00 211.00 OK
r-devel-windows-x86_64-gcc10-UCRT 1.2.0 OK
r-patched-linux-x86_64 1.2.0 5.22 102.41 107.63 OK
r-patched-solaris-x86 1.2.0 247.70 OK
r-release-linux-x86_64 1.2.0 5.06 102.08 107.14 OK
r-release-macos-arm64 1.2.0 ERROR
r-release-macos-x86_64 1.2.0 OK
r-release-windows-ix86+x86_64 1.2.0 12.00 444.00 456.00 OK
r-oldrel-macos-x86_64 1.2.0 OK
r-oldrel-windows-ix86+x86_64 1.2.0 8.00 334.00 342.00 OK

Check Details

Version: 1.2.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘biomaRt’
Flavor: r-release-macos-arm64

Version: 1.2.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [2s/3s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     • empty test (2)
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error (test-coding.genes.R:15:3): (code run outside of `test_that()`) ───────
     Error: there is no package called 'biomaRt'
     Backtrace:
     █
     1. └─base::loadNamespace(x) test-coding.genes.R:15:2
     2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     3. └─base:::withOneRestart(expr, restarts[[1L]])
     4. └─base:::doWithOneRestart(return(expr), restart)
    
     [ FAIL 1 | WARN 0 | SKIP 2 | PASS 211 ]
     Error: Test failures
     Execution halted
Flavor: r-release-macos-arm64

Version: 1.2.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘Overview.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    biomaRt is not installed, only using genes from NCBI (CCDS)
    Skipping biomaRt (is mart valid?: FALSE -- is biomaRt installed?: FALSE)
    Coding genes from biomaRt: 0
     Coding genes from CCDS: 19029
     added by CCDS: 19029
    -------------------------------
     total number of genes: 19029
    Quitting from lines 129-144 (Overview.Rmd)
    Error: processing vignette 'Overview.Rmd' failed with diagnostics:
    polygon edge not found
    --- failed re-building ‘Overview.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘Overview.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-macos-arm64