CRAN Package Check Results for Package admixr

Last updated on 2021-10-26 10:04:18 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9.1 2.95 34.82 37.77 OK
r-devel-linux-x86_64-debian-gcc 0.9.1 2.69 27.53 30.22 OK
r-devel-linux-x86_64-fedora-clang 0.9.1 55.94 OK
r-devel-linux-x86_64-fedora-gcc 0.9.1 46.10 OK
r-devel-windows-x86_64 0.9.1 6.00 67.00 73.00 OK
r-devel-windows-x86_64-gcc10-UCRT 0.9.1 OK
r-patched-linux-x86_64 0.9.1 3.26 34.27 37.53 OK
r-patched-solaris-x86 0.9.1 73.90 WARN
r-release-linux-x86_64 0.9.1 3.59 34.21 37.80 OK
r-release-macos-arm64 0.9.1 OK
r-release-macos-x86_64 0.9.1 OK
r-release-windows-ix86+x86_64 0.9.1 6.00 61.00 67.00 OK
r-oldrel-macos-x86_64 0.9.1 OK
r-oldrel-windows-ix86+x86_64 0.9.1 9.00 63.00 72.00 OK

Check Details

Version: 0.9.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘qpAdm.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    ADMIXTOOLS programs required by admixr are not in your $PATH variable.
    At the very least, the following programs should be available:
     qp3Pop, qpDstat, qpF4ratio, qpAdm, qpWave
    Make sure to modify the $PATH variable in your .Renviron file so
    that it points to the directory containing the ADMIXTOOLS programs.
    
    Quitting from lines 131-134 (qpAdm.Rmd)
    Error: processing vignette 'qpAdm.Rmd' failed with diagnostics:
    'wget' call had nonzero exit status
    --- failed re-building ‘qpAdm.Rmd’
    
    --- re-building ‘tutorial.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    ADMIXTOOLS programs required by admixr are not in your $PATH variable.
    At the very least, the following programs should be available:
     qp3Pop, qpDstat, qpF4ratio, qpAdm, qpWave
    Make sure to modify the $PATH variable in your .Renviron file so
    that it points to the directory containing the ADMIXTOOLS programs.
    
    ── Attaching packages ─────────────────────────────────────── tidyverse 1.3.1 ──
    ✔ ggplot2 3.3.5 ✔ purrr 0.3.4
    ✔ tibble 3.1.3 ✔ dplyr 1.0.7
    ✔ tidyr 1.1.3 ✔ stringr 1.4.0
    ✔ readr 2.0.1 ✔ forcats 0.5.1
    ── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
    ✖ dplyr::filter() masks stats::filter()
    ✖ dplyr::lag() masks stats::lag()
    Quitting from lines 132-133 (tutorial.Rmd)
    Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
    'wget' call had nonzero exit status
    --- failed re-building ‘tutorial.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘qpAdm.Rmd’ ‘tutorial.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86