MetaboAnnotatoR
This is the development version of MetaboAnnotatoR; to use it, please install the devel version of Bioconductor.
Automated Annotation of All-Ion Fragmentation LC-MS Metabolomic Features
Bioconductor version: Development (3.23)
Performs feature annotations on LC-MS All-ion fragmentation datasets using fragment ion libraries.
Author: Goncalo Graca [aut, cre]
, Yuheng (Rene) Cai [aut], Timothy Ebbels [aut]
Maintainer: Goncalo Graca <ggraca22 at gmail.com>
citation("MetaboAnnotatoR")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MetaboAnnotatoR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MetaboAnnotatoR")| Generate metabolite library entries | HTML | R Script |
| Import an MS/MS library | HTML | R Script |
| Introduction to MetaboAnnotatoR | HTML | R Script |
| Reference Manual |
Details
| biocViews | MassSpectrometry, Metabolomics, Software |
| Version | 0.99.21 |
| In Bioconductor since | BioC 3.23 (R-4.6) |
| License | GPL-3 |
| Depends | R (>= 4.5.0), xcms(>= 3.0.0), MSnbase(>= 2.16.1), ProtGenerics |
| Imports | ggplot2 (>= 3.3.3), gridExtra (>= 2.3) |
| System Requirements | |
| URL | https://github.com/gggraca/MetaboAnnotatoR |
| Bug Reports | https://github.com/gggraca/MetaboAnnotatoR/issues |
See More
| Suggests | rmarkdown, knitr, testthat (>= 3.0.0), BiocStyle, MsDataHub |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MetaboAnnotatoR_0.99.21.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (big-sur-arm64) | |
| macOS Binary (sonoma-arm64) | MetaboAnnotatoR_0.99.21.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MetaboAnnotatoR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MetaboAnnotatoR |
| Bioc Package Browser | https://code.bioconductor.org/browse/MetaboAnnotatoR/ |
| Package Short Url | https://bioconductor.org/packages/MetaboAnnotatoR/ |
| Package Downloads Report | Download Stats |