Changes in version 0.99.0 (2021-03-19)
+ Submitted to Bioconductor

Changes in version 1.1.x (2021-06-04)
+ split transformCounts into transformSamples and transformFeatures
+ added log_modulo_skewness as a diversity index
+ added functions for summarizing dominant taxa information
+ added wrapper for adding dominant taxa information to colData
+ added specialized subsetting function for subsetting by prevalence (subsetByPrevalentTaxa/subsetByRareTaxa)
+ added mapTaxonomy
+ added estimateDivergence
+ bugfix: makePhyloseqFromTreeSummarizedExperiment checks now for rowTree be compatible
+ bugfix: meltAssay supports Matrix types
+ bugfix: meltAssay is able to include rowData also when there are duplicated rownames

Changes in version 1.2.1 (2021-10-27)
+ added getExperimentCrossCorrelation for calculatting cross-correlation between features

Changes in version 1.2.2 (2021-11-05)
+ bugfix for getExperimentCrossCorrelation

Changes in version 1.2.3 (2021-11-27)
+ bugfix: taxonomyTree gave error when taxa were agglomerated at highest level (taxa name mismatch)

Changes in version 1.2.4 (2022-02-06)
+ bugfix: makeTreeSEFromPseq -- orientation of assay is taken into account

Changes in version 1.2.6 (2022-02-06)
+ bugfix: getExperimentCrossCorrelation's "matrix"" mode works with features named equally

Changes in version 1.2.7 (2022-02-06)
+ AgglomerateByRank: added option for removing NA cols