cBioPortalData
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see cBioPortalData.
Exposes and makes available data from the cBioPortal web resources
Bioconductor version: 3.13
The cBioPortalData package takes compressed resources from repositories such as cBioPortal and assembles a MultiAssayExperiment object with Bioconductor classes.
Author: Levi Waldron [aut], Marcel Ramos [aut, cre]
Maintainer: Marcel Ramos <marcel.ramos at roswellpark.org>
citation("cBioPortalData")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("cBioPortalData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cBioPortalData")| cBioPortal Data Build Errors | HTML | R Script |
| cBioPortal Quick-start Guide | HTML | R Script |
| cBioPortal User Guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Infrastructure, Software, ThirdPartyClient |
| Version | 2.4.10 |
| In Bioconductor since | BioC 3.11 (R-4.0) (4 years) |
| License | AGPL-3 |
| Depends | R (>= 4.0.0), AnVIL, MultiAssayExperiment |
| Imports | BiocFileCache(>= 1.5.3), digest, dplyr, GenomeInfoDb, GenomicRanges, httr, IRanges, methods, readr, RaggedExperiment, RTCGAToolbox(>= 2.19.7), S4Vectors, SummarizedExperiment, stats, tibble, tidyr, TCGAutils(>= 1.9.4), utils |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/waldronlab/cBioPortalData/issues |
See More
| Suggests | BiocStyle, knitr, survival, survminer, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | cBioPortalData_2.4.10.tar.gz |
| Windows Binary | cBioPortalData_2.4.10.zip |
| macOS 10.13 (High Sierra) | cBioPortalData_2.4.10.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/cBioPortalData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/cBioPortalData |
| Bioc Package Browser | https://code.bioconductor.org/browse/cBioPortalData/ |
| Package Short Url | https://bioconductor.org/packages/cBioPortalData/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.13 | Source Archive |