cellHTS2

Analysis of cell-based screens - revised version of cellHTS

Bioconductor version: Development (2.8)

Analysis of cell-based RNA interference screens. See ?cellHTS2 for a brief introduction.

Author: Ligia Bras, Wolfgang Huber, Michael Boutros , Gregoire Pau, Florian Hahne

Maintainer: Florian Hahne

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("cellHTS2")    

Documentation

PDF	R Script	Main vignette (complete version): End-to-end analysis of cell-based screens
PDF	R Script	Main vignette: End-to-end analysis of cell-based screens
PDF	R Script	Supplement: enhancer-suppressor screens
PDF	R Script	Supplement: multi-channel assays

Reference Manual

Details

biocViews	CellBasedAssays, Preprocessing, Visualization
Depends	RColorBrewer, Biobase, methods, genefilter, splots, vsn, hwriter, locfit, grid
Imports	prada, GSEABase, Category
Suggests
System Requirements
License	Artistic-2.0
URL	http://www.dkfz.de/signaling, http://www.ebi.ac.uk/huber
Depends On Me	HTSanalyzeR, coRNAi, imageHTS
Imports Me	HTSanalyzeR, RNAinteract
Suggests Me
Version	2.15.5

Package Downloads

Package Source	cellHTS2_2.15.5.tar.gz
Windows Binary	cellHTS2_2.15.5.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	cellHTS2_2.15.5.tgz
Package Downloads Report	Download Stats