BSgenome

Infrastructure for Biostrings-based genome data packages

Bioconductor version: 2.5

Infrastructure shared by all the Biostrings-based genome data packages

Author: Herve Pages

Maintainer: H. Pages

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("BSgenome")    

Documentation

PDF	R Script	Efficient genome searching with Biostrings and the BSgenome data packages
PDF	R Script	How to forge a BSgenome data package

Reference Manual

Details

biocViews	Genetics, Infrastructure
Depends	R, methods, IRanges, Biostrings
Imports
Suggests	BSgenome.Celegans.UCSC.ce2, BSgenome.Hsapiens.UCSC.hg18, SNPlocs.Hsapiens.dbSNP.20071016, hgu95av2probe, Biobase
System Requirements
License	Artistic-2.0
URL
Depends On Me	ChIPpeakAnno, chipseq, ShortRead
Imports Me	ChIPpeakAnno, chipseq, ChIPseqR, GenomicFeatures, rtracklayer, ShortRead
Suggests Me	Biostrings, GeneRegionScan
Version	1.14.2

Package Downloads

Package Source	BSgenome_1.14.2.tar.gz
Windows Binary	BSgenome_1.14.2.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	BSgenome_1.14.2.tgz
Package Downloads Report	Download Stats