zebrafishPMID           package:zebrafish           R Documentation

_M_a_p _b_e_t_w_e_e_n _M_a_n_u_f_a_c_t_u_r_e_r _I_d_e_n_t_i_f_i_e_r_s _a_n_d _P_u_b_M_e_d _I_d_e_n_t_i_f_i_e_r_s

_D_e_s_c_r_i_p_t_i_o_n:

     zebrafishPMID is an R environment that provides mappings between
     manufacturer ids and PubMed ids.

_D_e_t_a_i_l_s:

     Each manufacturer id is mapped to a named vector of PubMed ids.
     The name associated with each vector corresponds to the
     manufacturer id. The length of the vector may be one or greater,
     depending on how many PubMed ids a given manufacturer id is mapped
     to. An 'NA' is reported for any manufacturer id that cannot be
     mapped to a PubMed id.

     Titles, abstracts, and possibly full texts of articles can be
     obtained from PubMed by providing a valid PubMed id. The pubmed
     function of annotate can also be used for the same purpose.

     Mappings were based on data provided by:

     Entrez Gene:<URL:
     http://gopher5/compbio/annotationSourceData/ftp.ncbi.nlm.nih.gov/g
     ene/DATA/>. Built: Source data downloaded from Entrez Gene on Tue
     May 17 18:46:36 2005

     Package built Tue May 17 18:51:29 2005

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed>

_E_x_a_m_p_l_e_s:

         # Convert the environment to a list
         xx <- as.list(zebrafishPMID)
         if(length(xx) > 0){
             # The probe ids for the first two elements of XX
             xx[1:2]
             # Get the first one
             xx[[1]]
             if(interactive() && !is.null(xx[[1]]) && !is.na(xx[[1]])
                && require(annotate)){
                 # Gets article information as XML files
                 xmls <- pubmed(xx[[1]], disp = "data")
                 # Views article information using a browser
                 pubmed(xx[[1]], disp = "browser")
             }
         }

