Changes in version 1.0.15 - Fixed typo in mapRNA Changes in version 1.0.14 - Fixed inaccuracies in README - Fixed bug in RNAmergeGenomes Changes in version 1.0.13 - Updates citation Changes in version 1.0.12 - Updated RNAfeatures and plotRNAfeatures including new parameters to control plotting and representation of genomic features. - Updated citation Changes in version 1.0.11 - Major updated to RNAfeatures. Instead identifies features independently for the genome annotation rather than using preset features. Changes in version 1.0.1 - Version bump following Bioconductor updates. - Improved the RNAfeatures function due discrepancies. Previously, calculated width rather than relative number of features. - Improved RNAdistribution function, including fixing a small bug, replaced depreciated functioned and improved aesthetic and code structure. - Introduced new plotting function plotRNAfeatures. Changes in version 0.99.23 - Improved RNAfeatures function Changes in version 0.99.22 - Fixed issues in RNAimport function Changes in version 0.99.20 - Build redo Changes in version 0.99.19 - Missing connective in RNAfeatures when using repeats variable. - Added additional check for RNAsequences methods. Changes in version 0.99.17 - Corrected ORCID references for authors - Amended RNAmobile() to ensure removal of non-zero values - Improved look of PCA plot - Corrected documentation issue and code disparage in plotHeatmap(), and improved styling. - Included calculation of consensus sequence determination option for RNAsequence() Changes in version 0.99.15 - Alteration of vignette and README - Included clean FASTQ files as example data sets - Updated R data objects - Updated citation & news files - Addition of new function called mapRNA() - Deletion of RNAloci() and RNAmean() functions - Additional parameters to RNAimport() to support mRNA data importation - Removed parallel computation in RNAmergeGenomes() - Improved documentation of functions and removed inconsistencies. Changes in version 0.99.14 Previous changes - Added a NEWS.md file to track changes to the package. - RNAconsensus() changed to RNAdicercall() - Alterations to RNAdicercall() algorithm, including tie options, altered default tidy method. - RNAdicercall() introduced new column "DicerCount" and improved the functionality, specifically the exclude parameter. - RNAmobile() introduced new parameter, "threshold" - Improved RNAsequences() selection algorithm to consider a threshold value, and handling ties. - Improved error calling on functions - Added RNAdf2e() function - Improvements to plotSamplePCA() and plotHeatmap() - Amended RNAmergeAnnotations function to meet requirement - Removed unnecessary man files for GFF and FASTA files on remote repo - Fixed bug in RNAdistribution() plot, when sample specific - Broadened use of RNAattributes() function. - Updated vignette - Updated RNAdicercall() to allow any dicer-classification (not constricted to 20-24) - Converted cat() to message() for user information from functions - Amended example data - Amended CITATION and NEWs file - Altered examples in RNAmergeAnnotations/Genomes functions to prevent examples saving into users directory - updates inline with bioconductor requirements - Amended RNAmergeGenomes() and RNAmergeAnnotations() - Removed lazy loading of package data - RNAanalysis() changed name to RNAdifferentialAnalysis()