TargetSearch
A package for the analysis of GC-MS metabolite profiling data
Bioconductor version: Release (3.19)
This packages provides a flexible, fast and accurate method for targeted pre-processing of GC-MS data. The user provides a (often very large) set of GC chromatograms and a metabolite library of targets. The package will automatically search those targets in the chromatograms resulting in a data matrix that can be used for further data analysis.
Author: Alvaro Cuadros-Inostroza [aut, cre], Jan Lisec [aut], Henning Redestig [aut], Matt Hannah [aut]
Maintainer: Alvaro Cuadros-Inostroza <acuadros+bioc at gmail.com>
citation("TargetSearch")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TargetSearch")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TargetSearch")
RI correction extra | R Script | |
The TargetSearch Package | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DecisionTree, ImmunoOncology, MassSpectrometry, Preprocessing, Software |
Version | 2.6.2 |
In Bioconductor since | BioC 2.4 (R-2.9) (15.5 years) |
License | GPL (>= 2) |
Depends | |
Imports | graphics, grDevices, methods, ncdf4, stats, utils, assertthat |
System Requirements | |
URL | https://github.com/acinostroza/TargetSearch |
Bug Reports | https://github.com/acinostroza/TargetSearch/issues |
See More
Suggests | TargetSearchData, BiocStyle, knitr, tinytest |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | TargetSearch_2.6.2.tar.gz |
Windows Binary | TargetSearch_2.6.2.zip (64-bit only) |
macOS Binary (x86_64) | TargetSearch_2.6.2.tgz |
macOS Binary (arm64) | TargetSearch_2.6.2.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/TargetSearch |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TargetSearch |
Bioc Package Browser | https://code.bioconductor.org/browse/TargetSearch/ |
Package Short Url | https://bioconductor.org/packages/TargetSearch/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.19 | Source Archive |