BioTIP

BioTIP: An R package for characterization of Biological Tipping-Point


Bioconductor version: Release (3.19)

Adopting tipping-point theory to transcriptome profiles to unravel disease regulatory trajectory.

Author: Zhezhen Wang, Andrew Goldstein, Yuxi Sun, Biniam Feleke, Qier An, Antonio Feliciano, Xinan Yang

Maintainer: Yuxi (Jennifer) Sun <ysun11 at uchicago.edu>, Zhezhen Wang <zhezhen at uchicago.edu>, and X Holly Yang <xyang2 at uchicago.edu>

Citation (from within R, enter citation("BioTIP")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BioTIP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews GeneExpression, RNASeq, Sequencing, Software, Transcription
Version 1.18.0
In Bioconductor since BioC 3.10 (R-3.6) (5 years)
License GPL-2
Depends R (>= 3.6)
Imports igraph, cluster, psych, stringr, GenomicRanges, MASS, scran
System Requirements
URL https://github.com/xyang2uchicago/BioTIP
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Suggests knitr, markdown, base, rmarkdown, ggplot2
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary BioTIP_1.18.0.zip
macOS Binary (x86_64) BioTIP_1.18.0.tgz
macOS Binary (arm64) BioTIP_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BioTIP
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BioTIP
Bioc Package Browser https://code.bioconductor.org/browse/BioTIP/
Package Short Url https://bioconductor.org/packages/BioTIP/
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