Protein motifs analysis and visualisation

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Documentation for package ‘PMScanR’ version 1.0.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

extractProteinMotifs	Extract protein motifs from GFF, PSA, or PROSITE text files
extractSegments	Extract sequence fragments from a list of sequences
freqPie	Create a pie chart showing protein motif distribution
gff2matrix	Convert GFF to a binary occurrence matrix
matrix2OP	Generate a occurrence plot from a matrix
matrix2SquareOP	Generate a square occurrence plot from a matrix
readProsite	Convert PROSITE format to a GFF-like Data Frame
readPsa	Parse a PSA (PROSITE Scan ASCII) File
runPMScanRShiny	Launch the PMScanR Shiny Application
runPsScan	Run PS-Scan with Flexible Configuration