extractProteinMotifs    Extract protein motifs from GFF, PSA, or
                        PROSITE text files
extractSegments         Extract sequence fragments from a list of
                        sequences
freqPie                 Create a pie chart showing protein motif
                        distribution
gff2matrix              Convert GFF to a binary occurrence matrix
matrix2OP               Generate a occurrence plot from a matrix
matrix2SquareOP         Generate a square occurrence plot from a matrix
readProsite             Convert PROSITE format to a GFF-like Data Frame
readPsa                 Parse a PSA (PROSITE Scan ASCII) File
runPMScanRShiny         Launch the PMScanR Shiny Application
runPsScan               Run PS-Scan with Flexible Configuration
