GSReg

This is the development version of GSReg; for the stable release version, see GSReg.

Gene Set Regulation (GS-Reg)


Bioconductor version: Development (3.20)

A package for gene set analysis based on the variability of expressions as well as a method to detect Alternative Splicing Events . It implements DIfferential RAnk Conservation (DIRAC) and gene set Expression Variation Analysis (EVA) methods. For detecting Differentially Spliced genes, it provides an implementation of the Spliced-EVA (SEVA).

Author: Bahman Afsari <bahman at jhu.edu>, Elana J. Fertig <ejfertig at jhmi.edu>

Maintainer: Bahman Afsari <bahman at jhu.edu>, Elana J. Fertig <ejfertig at jhmi.edu>

Citation (from within R, enter citation("GSReg")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GSReg")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSReg")
Working with the GSReg package PDF R Script
Reference Manual PDF

Details

biocViews AlternativeSplicing, GeneExpression, GeneRegulation, GeneSetEnrichment, GeneticVariability, Pathways, Software
Version 1.39.0
In Bioconductor since BioC 3.0 (R-3.1) (10 years)
License GPL-2
Depends R (>= 2.13.1), Homo.sapiens, org.Hs.eg.db, GenomicFeatures, AnnotationDbi
Imports
System Requirements
URL
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Suggests GenomicRanges, GSBenchMark
Linking To
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Depends On Me
Imports Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GSReg_1.39.0.tar.gz
Windows Binary GSReg_1.39.0.zip (64-bit only)
macOS Binary (x86_64) GSReg_1.39.0.tgz
macOS Binary (arm64) GSReg_1.39.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GSReg
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GSReg
Bioc Package Browser https://code.bioconductor.org/browse/GSReg/
Package Short Url https://bioconductor.org/packages/GSReg/
Package Downloads Report Download Stats