BiocBaseUtils
This is the development version of BiocBaseUtils; for the stable release version, see BiocBaseUtils.
Utility and internal functions for Bioconductor packages
Bioconductor version: Development (3.24)
The package coalesces typical helper functions that are scattered throughout the Bioconductor ecosystem. It aims to reduce code redundancy by formalizing functions often used by Bioconductor developers. These functions include operations such as replacing slots in an object, selecting observations for show methods, labeling function life cycles, and more.
Author: Marcel Ramos [aut, cre]
, Martin Morgan [ctb], Hervé Pagès [ctb]
Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>
citation("BiocBaseUtils")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("BiocBaseUtils")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BiocBaseUtils")| BiocBaseUtils Quick Start | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Infrastructure, Software |
| Version | 1.15.1 |
| In Bioconductor since | BioC 3.16 (R-4.2) (3.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.6.0) |
| Imports | methods, utils |
| System Requirements | |
| URL | https://www.github.com/Bioconductor/BiocBaseUtils |
| Bug Reports | https://www.github.com/Bioconductor/BiocBaseUtils/issues |
See More
| Suggests | knitr, rmarkdown, BiocStyle, tinytest |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | AlphaMissenseR, AnnotationHub, AnVIL, AnVILAz, AnVILGCP, AnVILPublish, Bioc.gff, BiocCheck, BiocFHIR, BiocPkgDash, cBioPortalData, DNAfusion, GCPtools, GenomicFiles, GraphExperiment, HistoImagePlot, imageFeatureTCGA, imageTCGAutils, iSEEfier, looking4clusters, MultiAssayExperiment, RaggedExperiment, scGraphVerse, TCGAutils, TENxIO, UniProt.ws, VisiumIO, visiumStitched, XeniumIO, SingleCellMultiModal |
| Suggests Me | scifer |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BiocBaseUtils_1.15.1.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/BiocBaseUtils |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BiocBaseUtils |
| Bioc Package Browser | https://code.bioconductor.org/browse/BiocBaseUtils/ |
| Package Short Url | https://bioconductor.org/packages/BiocBaseUtils/ |
| Package Downloads Report | Download Stats |