scsR
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see scsR.
SiRNA correction for seed mediated off-target effect
Bioconductor version: 3.9
Corrects genome-wide siRNA screens for seed mediated off-target effect. Suitable functions to identify the effective seeds/miRNAs and to visualize their effect are also provided in the package.
Author: Andrea Franceschini
Maintainer: Andrea Franceschini <andrea.franceschini at isb-sib.ch>, Roger Meier <roger.meier at lmsc.ethz.ch>, Christian von Mering <mering at imls.uzh.ch>
citation("scsR")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("scsR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scsR")| scsR Vignette | R Script | |
| Reference Manual |
Details
| biocViews | Preprocessing, Software |
| Version | 1.20.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (10 years) |
| License | GPL-2 |
| Depends | R (>= 2.14.0), STRINGdb, methods, BiocGenerics, Biostrings, IRanges, plyr, tcltk |
| Imports | sqldf, hash, ggplot2, graphics, grDevices, RColorBrewer |
| System Requirements | |
| URL |
See More
| Suggests | RUnit |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | scsR_1.20.0.tar.gz |
| Windows Binary | scsR_1.20.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | scsR_1.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/scsR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/scsR |
| Bioc Package Browser | https://code.bioconductor.org/browse/scsR/ |
| Package Short Url | https://bioconductor.org/packages/scsR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |