Streamer
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see Streamer.
Enabling stream processing of large files
Bioconductor version: 3.9
Large data files can be difficult to work with in R, where data generally resides in memory. This package encourages a style of programming where data is 'streamed' from disk into R via a `producer' and through a series of `consumers' that, typically reduce the original data to a manageable size. The package provides useful Producer and Consumer stream components for operations such as data input, sampling, indexing, and transformation; see package?Streamer for details.
Author: Martin Morgan, Nishant Gopalakrishnan
Maintainer: Martin Morgan <martin.morgan at roswellpark.org>
citation("Streamer")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Streamer")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Streamer")| Streamer: A simple example | R Script | |
| Reference Manual |
Details
| biocViews | DataImport, Infrastructure, Software |
| Version | 1.30.0 |
| In Bioconductor since | BioC 2.9 (R-2.14) (12.5 years) |
| License | Artistic-2.0 |
| Depends | |
| Imports | methods, graph, RBGL, parallel, BiocGenerics |
| System Requirements | |
| URL |
See More
| Suggests | RUnit, Rsamtools(>= 1.5.53), GenomicAlignments, Rgraphviz |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | plethy |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Streamer_1.30.0.tar.gz |
| Windows Binary | Streamer_1.30.0.zip |
| Mac OS X 10.11 (El Capitan) | Streamer_1.30.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Streamer |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Streamer |
| Bioc Package Browser | https://code.bioconductor.org/browse/Streamer/ |
| Package Short Url | https://bioconductor.org/packages/Streamer/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |