epigenomix
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see epigenomix.
Epigenetic and gene transcription data normalization and integration with mixture models
Bioconductor version: 3.8
A package for the integrative analysis of RNA-seq or microarray based gene transcription and histone modification data obtained by ChIP-seq. The package provides methods for data preprocessing and matching as well as methods for fitting bayesian mixture models in order to detect genes with differences in both data types.
Author: Hans-Ulrich Klein, Martin Schaefer
Maintainer: Hans-Ulrich Klein <h.klein at uni-muenster.de>
citation("epigenomix")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("epigenomix")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("epigenomix")| epigenomix package vignette | R Script | |
| Reference Manual |
Details
| biocViews | ChIPSeq, Classification, DifferentialExpression, GeneExpression, Software |
| Version | 1.22.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (11 years) |
| License | LGPL-3 |
| Depends | R (>= 3.2.0), methods, Biobase, S4Vectors, IRanges, GenomicRanges, SummarizedExperiment |
| Imports | BiocGenerics, MCMCpack, Rsamtools, parallel, GenomeInfoDb, beadarray |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | epigenomix_1.22.0.tar.gz |
| Windows Binary | epigenomix_1.22.0.zip |
| Mac OS X 10.11 (El Capitan) | epigenomix_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/epigenomix |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/epigenomix |
| Bioc Package Browser | https://code.bioconductor.org/browse/epigenomix/ |
| Package Short Url | https://bioconductor.org/packages/epigenomix/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.8 | Source Archive |