furrowSeg
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see furrowSeg.
Furrow Segmentation
Bioconductor version: 3.7
Image feature data and analysis codes for the Guglielmi, Barry et al. paper describing the application of an optogenetics tools to disrupt Drosophila embryo furrowing.
Author: Joseph Barry
Maintainer: Joseph Barry <joseph.barry at embl.de>
Citation (from within R, enter
citation("furrowSeg")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("furrowSeg")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("furrowSeg")| Supplementary Methods - Automatic generation of paper figures | R Script | |
| Supplementary Methods - Example furrow segmentation | R Script | |
| Reference Manual |
Details
| biocViews | Drosophila_melanogaster_Data, ExperimentData, ReproducibleResearch, Tissue |
| Version | 1.8.0 |
| License | Artistic-2.0 |
| Depends | R (>= 3.3), EBImage |
| Imports | abind, dplyr, locfit, tiff |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, ggplot2, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | furrowSeg_1.8.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/furrowSeg |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/furrowSeg |
| Package Short Url | https://bioconductor.org/packages/furrowSeg/ |
| Package Downloads Report | Download Stats |