TBPpwm                  Position-weight matrix for TATA-box binding
                        protein motif
getPatternOccurrenceList
                        Occurrence of sequence patterns in a set of
                        ordered sequences
motifScanHits           Occurrence of motifs in a set of ordered
                        sequences
motifScanScores         Motif scanning scores for a set of ordered
                        sequences
plotMotifDensityMap     Plotting density maps of motif occurrence
plotMotifOccurrenceAverage
                        Plotting average profile of motif occurrence
plotMotifScanScores     Plotting heatmap of motif scanning scores
plotPatternDensityMap   Plotting density maps of sequence pattern
                        occurrence
plotPatternOccurrenceAverage
                        Plotting average profile of sequence pattern
                        occurrence
seqPattern-package      Visualising oligonucleotide patterns and motif
                        occurences across a set of ordered sequences
zebrafishPromoters      Zebrafish promoters sequences
zebrafishPromoters24h   Zebrafish promoters genomic coordinates
