sesameData
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see sesameData.
Supporting Data for SeSAMe Package
Bioconductor version: 3.16
Provides supporting annotation and test data for SeSAMe package. This includes chip tango addresses, mapping information, performance annotation, and trained predictor for Infinium array data. This package provides user access to essential annotation data for working with many generations of the Infinium DNA methylation array. Current we support human array (HM27, HM450, EPIC), mouse array (MM285) and the HorvathMethylChip40 (Mammal40) array.
Author: Wanding Zhou [aut, cre], Hui Shen [aut], Timothy Triche [ctb]
Maintainer: Wanding Zhou <zhouwanding at gmail.com>
citation("sesameData")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("sesameData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sesameData")| sesameData User Guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, ExperimentHub, Genome, MethylationArrayData, MicroarrayData |
| Version | 1.16.0 |
| License | Artistic-2.0 |
| Depends | R (>= 4.1), ExperimentHub, AnnotationHub |
| Imports | utils, readr, stringr, GenomicRanges, S4Vectors, IRanges, GenomeInfoDb |
| System Requirements | |
| URL |
See More
| Suggests | BiocGenerics, sesame, testthat, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | sesame |
| Imports Me | MethReg |
| Suggests Me | ELMER |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | sesameData_1.16.0.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/sesameData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/sesameData |
| Package Short Url | https://bioconductor.org/packages/sesameData/ |
| Package Downloads Report | Download Stats |