scpdata

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see scpdata.

Single-Cell Proteomics Data Package


Bioconductor version: 3.16

The package disseminates mass spectrometry (MS)-based single-cell proteomics (SCP) datasets. The data were collected from published work and formatted using the `scp` data structure. The data sets contain quantitative information at spectrum, peptide and/or protein level for single cells or minute sample amounts.

Author: Christophe Vanderaa [aut, cre] , Laurent Gatto [aut]

Maintainer: Christophe Vanderaa <christophe.vanderaa at uclouvain.be>

Citation (from within R, enter citation("scpdata")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scpdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scpdata")
Data Package for Single Cell Proteomics HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, MassSpectrometryData, PackageTypeData, Proteome, ReproducibleResearch, SingleCellData
Version 1.6.0
License GPL-2
Depends R (>= 4.2.0), QFeatures, ExperimentHub
Imports utils, AnnotationHub, SingleCellExperiment, S4Vectors
System Requirements
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Suggests scp, magrittr, dplyr, knitr, BiocStyle, BiocCheck, rmarkdown, testthat
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package scpdata_1.6.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/scpdata
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/scpdata
Package Short Url https://bioconductor.org/packages/scpdata/
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