muscData

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see muscData.

Multi-sample multi-group scRNA-seq data

Bioconductor version: 3.16

Data package containing a collection of multi-sample multi-group scRNA-seq datasets in SingleCellExperiment Bioconductor object format.

Author: Helena L. Crowell [aut, cre]

Maintainer: Helena L. Crowell <helena.crowell at uzh.ch>

Citation (from within R, enter citation("muscData")):

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("muscData")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("muscData")

Multi-sample multi-group scRNA-seq data	HTML	R Script
Reference Manual	PDF
LICENSE	Text

biocViews	ExperimentData, ExperimentHub, ExpressionData, GEO, Homo_sapiens_Data, ImmunoOncologyData, SingleCellData
Version	1.12.0
License	MIT + file LICENSE
Depends	R (>= 3.6), ExperimentHub, SingleCellExperiment
Imports	utils
System Requirements
URL	https://github.com/HelenaLC/muscData
Bug Reports	https://github.com/HelenaLC/muscData/issues

Suggests	BiocStyle, dplyr, DropletUtils, knitr, GEOquery, Matrix, matrixStats, methods, muscat, rmarkdown, R.utils, readxl, scater, scds, Seurat
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Depends On Me
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Suggests Me	glmGamPoi
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Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	muscData_1.12.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/muscData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/muscData
Package Short Url	https://bioconductor.org/packages/muscData/
Package Downloads Report	Download Stats