bodymapRat

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see bodymapRat.

Experimental dataset from the rat BodyMap project


Bioconductor version: 3.16

This package contains a SummarizedExperiment from the Yu et al. (2013) paper that performed the rat BodyMap across 11 organs and 4 developmental stages. Raw FASTQ files were downloaded and mapped using STAR. Data is available on ExperimentHub as a data package.

Author: Stephanie Hicks [aut, cre] , Kwame Okrah [aut]

Maintainer: Stephanie Hicks <shicks19 at jhu.edu>

Citation (from within R, enter citation("bodymapRat")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("bodymapRat")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bodymapRat")
The bodymapRat data user's guide HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData
Version 1.14.0
License CC BY 4.0
Depends R (>= 3.6.0), SummarizedExperiment, ExperimentHub
Imports utils
System Requirements
URL
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Suggests rmarkdown, knitr, BiocStyle, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me qsmooth
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package bodymapRat_1.14.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/bodymapRat
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/bodymapRat
Package Short Url https://bioconductor.org/packages/bodymapRat/
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