RTCGA.mRNA

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see RTCGA.mRNA.

mRNA datasets from The Cancer Genome Atlas Project

Bioconductor version: 3.16

Package provides mRNA datasets from The Cancer Genome Atlas Project for all available cohorts types from http://gdac.broadinstitute.org/. Data format is explained here https://wiki.nci.nih.gov/display/TCGA/Gene+expression+data Data from 2015-11-01 snapshot.

Author: Witold Chodor <witoldchodor at gmail.com>

Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>

Citation (from within R, enter citation("RTCGA.mRNA")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RTCGA.mRNA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RTCGA.mRNA")

Using RTCGA to download mRNA data as included in RTCGA.mRNA	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	AnnotationData, ExperimentData
Version	1.26.0
License	GPL-2
Depends	R (>= 3.3.0), RTCGA
Imports
System Requirements
URL
Bug Reports	https://github.com/RTCGA/RTCGA/issues

Suggests	knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	CancerSubtypes, RTCGA
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RTCGA.mRNA_1.26.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/RTCGA.mRNA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RTCGA.mRNA
Package Short Url	https://bioconductor.org/packages/RTCGA.mRNA/
Package Downloads Report	Download Stats