HighlyReplicatedRNASeq

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see HighlyReplicatedRNASeq.

Collection of Bulk RNA-Seq Experiments With Many Replicates


Bioconductor version: 3.16

Gene-level count matrix data for bulk RNA-seq dataset with many replicates. The data are provided as easy to use SummarizedExperiment objects. The source data that is made accessible through this package comes from https://github.com/bartongroup/profDGE48.

Author: Constantin Ahlmann-Eltze [aut, cre]

Maintainer: Constantin Ahlmann-Eltze <artjom31415 at googlemail.com>

Citation (from within R, enter citation("HighlyReplicatedRNASeq")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HighlyReplicatedRNASeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HighlyReplicatedRNASeq")
Exploring the 86 bulk RNA-seq samples from the Schurch et al. (2016) study HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData
Version 1.10.0
License MIT + file LICENSE
Depends SummarizedExperiment, ExperimentHub
Imports S4Vectors
System Requirements
URL https://github.com/const-ae/HighlyReplicatedRNASeq
Bug Reports https://github.com/const-ae/HighlyReplicatedRNASeq/issues
See More
Suggests BiocStyle, BiocFileCache, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HighlyReplicatedRNASeq_1.10.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/HighlyReplicatedRNASeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HighlyReplicatedRNASeq
Package Short Url https://bioconductor.org/packages/HighlyReplicatedRNASeq/
Package Downloads Report Download Stats